JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPP1R12B_chr1_202343699_202597702	0/0	t0103	12304	1	0	1	0	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0104	12296	1	0	0	1	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0105	12304	1	1	0	0	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12B_chr1_202343699_202597702	0/0	t0106	12301	1	1	0	0	0	0	copy fasta	PPP1R12B	chr1	202343699	202597702
PPP1R12C_chr19_55085918_55122637	1/1	t0001	649	385	90	74	164	12	43	copy fasta	PPP1R12C	chr19	55085918	55122637
PPP1R12C_chr19_55085918_55122637	0/0	t0002	649	1	1	0	0	0	0	copy fasta	PPP1R12C	chr19	55085918	55122637
PPP1R12C_chr19_55085918_55122637	0/0	t0003	649	1	1	0	0	0	0	copy fasta	PPP1R12C	chr19	55085918	55122637
PPP1R12C_chr19_55085918_55122637	0/0	t0004	649	1	1	0	0	0	0	copy fasta	PPP1R12C	chr19	55085918	55122637
PPP1R12C_chr19_55085918_55122637	0/0	t0005	649	1	1	0	0	0	0	copy fasta	PPP1R12C	chr19	55085918	55122637
PPP1R12C_chr19_55085918_55122637	0/0	t0006	637	1	0	0	0	0	1	copy fasta	PPP1R12C	chr19	55085918	55122637
PPP1R13B_chr14_103728195_103852575	1/0	t0001	2228	177	46	38	63	10	19	copy fasta	PPP1R13B	chr14	103728195	103852575
PPP1R13B_chr14_103728195_103852575	0/0	t0002	2228	85	6	17	48	4	10	copy fasta	PPP1R13B	chr14	103728195	103852575
PPP1R13B_chr14_103728195_103852575	0/0	t0003	2228	23	21	2	0	0	0	copy fasta	PPP1R13B	chr14	103728195	103852575
PPP1R13B_chr14_103728195_103852575	0/1	t0004	2227	20	5	6	6	0	2	copy fasta	PPP1R13B	chr14	103728195	103852575
PPP1R13B_chr14_103728195_103852575	0/0	t0005	2227	6	5	1	0	0	0	copy fasta	PPP1R13B	chr14	103728195	103852575
PPP1R13B_chr14_103728195_103852575	0/0	t0006	2228	2	0	1	0	0	1	copy fasta	PPP1R13B	chr14	103728195	103852575
PPP1R13B_chr14_103728195_103852575	0/0	t0007	2228	2	2	0	0	0	0	copy fasta	PPP1R13B	chr14	103728195	103852575
PPP1R13B_chr14_103728195_103852575	0/0	t0008	2228	2	1	1	0	0	0	copy fasta	PPP1R13B	chr14	103728195	103852575
PPP1R13B_chr14_103728195_103852575	0/0	t0009	2228	1	1	0	0	0	0	copy fasta	PPP1R13B	chr14	103728195	103852575
PPP1R13B_chr14_103728195_103852575	0/0	t0010	2228	1	0	0	0	0	1	copy fasta	PPP1R13B	chr14	103728195	103852575
PPP1R13B_chr14_103728195_103852575	0/0	t0011	2228	1	0	0	1	0	0	copy fasta	PPP1R13B	chr14	103728195	103852575
PPP1R13B_chr14_103728195_103852575	0/0	t0012	2228	1	0	0	1	0	0	copy fasta	PPP1R13B	chr14	103728195	103852575
PPP1R13B_chr14_103728195_103852575	0/0	t0013	2228	1	0	0	1	0	0	copy fasta	PPP1R13B	chr14	103728195	103852575
PPP1R13B_chr14_103728195_103852575	0/0	t0014	2228	1	0	0	0	0	1	copy fasta	PPP1R13B	chr14	103728195	103852575
PPP1R13B_chr14_103728195_103852575	0/0	t0015	2228	1	0	0	0	0	1	copy fasta	PPP1R13B	chr14	103728195	103852575
PPP1R13B_chr14_103728195_103852575	0/0	t0016	2228	1	0	0	1	0	0	copy fasta	PPP1R13B	chr14	103728195	103852575
PPP1R13B_chr14_103728195_103852575	0/0	t0017	2228	1	1	0	0	0	0	copy fasta	PPP1R13B	chr14	103728195	103852575
PPP1R13B_chr14_103728195_103852575	0/0	t0018	2228	1	0	0	1	0	0	copy fasta	PPP1R13B	chr14	103728195	103852575
PPP1R13B_chr14_103728195_103852575	0/0	t0019	2228	1	1	0	0	0	0	copy fasta	PPP1R13B	chr14	103728195	103852575
PPP1R13B_chr14_103728195_103852575	0/0	t0020	2228	1	1	0	0	0	0	copy fasta	PPP1R13B	chr14	103728195	103852575
PPP1R13B_chr14_103728195_103852575	0/0	t0021	2228	1	1	0	0	0	0	copy fasta	PPP1R13B	chr14	103728195	103852575
PPP1R13B_chr14_103728195_103852575	0/0	t0022	2228	1	1	0	0	0	0	copy fasta	PPP1R13B	chr14	103728195	103852575
PPP1R13B_chr14_103728195_103852575	0/0	t0023	2228	1	0	0	0	0	1	copy fasta	PPP1R13B	chr14	103728195	103852575
PPP1R13L_chr19_45374638_45410069	1/1	t0001	645	195	24	48	77	13	31	copy fasta	PPP1R13L	chr19	45374638	45410069
PPP1R13L_chr19_45374638_45410069	0/0	t0002	645	166	60	25	69	1	11	copy fasta	PPP1R13L	chr19	45374638	45410069
PPP1R13L_chr19_45374638_45410069	0/0	t0003	645	6	6	0	0	0	0	copy fasta	PPP1R13L	chr19	45374638	45410069
PPP1R13L_chr19_45374638_45410069	0/0	t0004	645	2	0	0	2	0	0	copy fasta	PPP1R13L	chr19	45374638	45410069
PPP1R13L_chr19_45374638_45410069	0/0	t0005	645	2	2	0	0	0	0	copy fasta	PPP1R13L	chr19	45374638	45410069
PPP1R13L_chr19_45374638_45410069	0/0	t0006	645	1	0	0	0	0	1	copy fasta	PPP1R13L	chr19	45374638	45410069
PPP1R13L_chr19_45374638_45410069	0/0	t0007	645	1	1	0	0	0	0	copy fasta	PPP1R13L	chr19	45374638	45410069
PPP1R13L_chr19_45374638_45410069	0/0	t0008	645	1	1	0	0	0	0	copy fasta	PPP1R13L	chr19	45374638	45410069
PPP1R13L_chr19_45374638_45410069	0/0	t0009	645	1	0	0	0	0	1	copy fasta	PPP1R13L	chr19	45374638	45410069
PPP1R13L_chr19_45374638_45410069	0/0	t0010	645	1	0	1	0	0	0	copy fasta	PPP1R13L	chr19	45374638	45410069
PPP1R14A_chr19_38246237_38261374	1/1	t0001	117	425	87	80	194	12	50	copy fasta	PPP1R14A	chr19	38246237	38261374
PPP1R14A_chr19_38246237_38261374	0/0	t0002	117	1	1	0	0	0	0	copy fasta	PPP1R14A	chr19	38246237	38261374
PPP1R14B_chr11_64239479_64251943	0/1	t0001	546	341	76	78	138	12	36	copy fasta	PPP1R14B	chr11	64239479	64251943
PPP1R14B_chr11_64239479_64251943	0/0	t0002	546	21	20	1	0	0	0	copy fasta	PPP1R14B	chr11	64239479	64251943
PPP1R14B_chr11_64239479_64251943	0/0	t0003	546	1	0	0	0	0	1	copy fasta	PPP1R14B	chr11	64239479	64251943
PPP1R14B_chr11_64239479_64251943	0/0	t0004	546	1	0	0	0	0	1	copy fasta	PPP1R14B	chr11	64239479	64251943
PPP1R14B_chr11_64239479_64251943	0/0	t0005	534	1	0	1	0	0	0	copy fasta	PPP1R14B	chr11	64239479	64251943