JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPP1R14C_chr6_150138044_150255392	1/1	t0001	1722	128	16	30	45	11	24	copy fasta	PPP1R14C	chr6	150138044	150255392
PPP1R14C_chr6_150138044_150255392	0/0	t0002	1721	51	8	6	27	3	7	copy fasta	PPP1R14C	chr6	150138044	150255392
PPP1R14C_chr6_150138044_150255392	0/0	t0003	1722	51	21	11	15	0	4	copy fasta	PPP1R14C	chr6	150138044	150255392
PPP1R14C_chr6_150138044_150255392	0/0	t0004	1723	15	0	8	0	3	4	copy fasta	PPP1R14C	chr6	150138044	150255392
PPP1R14C_chr6_150138044_150255392	0/0	t0005	1721	11	0	1	8	0	2	copy fasta	PPP1R14C	chr6	150138044	150255392
PPP1R14C_chr6_150138044_150255392	0/0	t0006	1721	10	9	1	0	0	0	copy fasta	PPP1R14C	chr6	150138044	150255392
PPP1R14C_chr6_150138044_150255392	0/0	t0007	1721	7	7	0	0	0	0	copy fasta	PPP1R14C	chr6	150138044	150255392
PPP1R14C_chr6_150138044_150255392	0/0	t0008	1723	6	1	3	1	0	1	copy fasta	PPP1R14C	chr6	150138044	150255392
PPP1R14C_chr6_150138044_150255392	0/0	t0009	1721	4	4	0	0	0	0	copy fasta	PPP1R14C	chr6	150138044	150255392
PPP1R14C_chr6_150138044_150255392	0/0	t0010	1723	4	4	0	0	0	0	copy fasta	PPP1R14C	chr6	150138044	150255392
PPP1R14C_chr6_150138044_150255392	0/0	t0011	1723	3	3	0	0	0	0	copy fasta	PPP1R14C	chr6	150138044	150255392
PPP1R14C_chr6_150138044_150255392	0/0	t0012	1722	3	0	3	0	0	0	copy fasta	PPP1R14C	chr6	150138044	150255392
PPP1R14C_chr6_150138044_150255392	0/0	t0013	1721	3	0	2	0	1	0	copy fasta	PPP1R14C	chr6	150138044	150255392
PPP1R14C_chr6_150138044_150255392	0/0	t0014	1722	3	3	0	0	0	0	copy fasta	PPP1R14C	chr6	150138044	150255392
PPP1R14C_chr6_150138044_150255392	0/0	t0015	1722	2	0	1	0	0	1	copy fasta	PPP1R14C	chr6	150138044	150255392
PPP1R14C_chr6_150138044_150255392	0/0	t0016	1722	2	0	2	0	0	0	copy fasta	PPP1R14C	chr6	150138044	150255392
PPP1R14C_chr6_150138044_150255392	0/0	t0017	1722	1	1	0	0	0	0	copy fasta	PPP1R14C	chr6	150138044	150255392
PPP1R14C_chr6_150138044_150255392	0/0	t0018	1722	1	1	0	0	0	0	copy fasta	PPP1R14C	chr6	150138044	150255392
PPP1R14C_chr6_150138044_150255392	0/0	t0019	1721	1	1	0	0	0	0	copy fasta	PPP1R14C	chr6	150138044	150255392
PPP1R14C_chr6_150138044_150255392	0/0	t0020	1722	1	0	0	0	0	1	copy fasta	PPP1R14C	chr6	150138044	150255392
PPP1R14C_chr6_150138044_150255392	0/0	t0021	1722	1	1	0	0	0	0	copy fasta	PPP1R14C	chr6	150138044	150255392
PPP1R14C_chr6_150138044_150255392	0/0	t0022	1722	1	1	0	0	0	0	copy fasta	PPP1R14C	chr6	150138044	150255392
PPP1R14C_chr6_150138044_150255392	0/0	t0023	1722	1	1	0	0	0	0	copy fasta	PPP1R14C	chr6	150138044	150255392
PPP1R14C_chr6_150138044_150255392	0/0	t0024	1722	1	1	0	0	0	0	copy fasta	PPP1R14C	chr6	150138044	150255392
PPP1R14C_chr6_150138044_150255392	0/0	t0025	1721	1	1	0	0	0	0	copy fasta	PPP1R14C	chr6	150138044	150255392
PPP1R14D_chr15_40810451_40833708	1/1	t0001	313	386	89	66	175	16	38	copy fasta	PPP1R14D	chr15	40810451	40833708
PPP1R14D_chr15_40810451_40833708	0/0	t0002	313	1	0	0	1	0	0	copy fasta	PPP1R14D	chr15	40810451	40833708
PPP1R14D_chr15_40810451_40833708	0/0	t0003	313	1	1	0	0	0	0	copy fasta	PPP1R14D	chr15	40810451	40833708
PPP1R15A_chr19_48867421_48881058	1/1	t0001	326	253	19	49	149	6	28	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	t0002	326	151	69	29	32	8	13	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	t0003	326	1	0	0	1	0	0	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15A_chr19_48867421_48881058	0/0	t0004	326	1	0	0	0	0	1	copy fasta	PPP1R15A	chr19	48867421	48881058
PPP1R15B_chr1_204398381_204416817	1/0	t0001	3118	283	35	48	145	16	38	copy fasta	PPP1R15B	chr1	204398381	204416817
PPP1R15B_chr1_204398381_204416817	0/0	t0002	3118	46	24	5	14	0	3	copy fasta	PPP1R15B	chr1	204398381	204416817
PPP1R15B_chr1_204398381_204416817	0/0	t0003	3118	10	7	1	0	1	1	copy fasta	PPP1R15B	chr1	204398381	204416817
PPP1R15B_chr1_204398381_204416817	0/0	t0004	3118	8	1	5	0	0	2	copy fasta	PPP1R15B	chr1	204398381	204416817
PPP1R15B_chr1_204398381_204416817	0/0	t0005	3116	8	8	0	0	0	0	copy fasta	PPP1R15B	chr1	204398381	204416817
PPP1R15B_chr1_204398381_204416817	0/0	t0006	3118	8	0	0	8	0	0	copy fasta	PPP1R15B	chr1	204398381	204416817
PPP1R15B_chr1_204398381_204416817	0/0	t0007	3118	7	4	3	0	0	0	copy fasta	PPP1R15B	chr1	204398381	204416817
PPP1R15B_chr1_204398381_204416817	0/0	t0008	3118	6	6	0	0	0	0	copy fasta	PPP1R15B	chr1	204398381	204416817
PPP1R15B_chr1_204398381_204416817	0/0	t0009	3118	3	3	0	0	0	0	copy fasta	PPP1R15B	chr1	204398381	204416817
PPP1R15B_chr1_204398381_204416817	0/0	t0010	3118	2	0	0	2	0	0	copy fasta	PPP1R15B	chr1	204398381	204416817
PPP1R15B_chr1_204398381_204416817	0/0	t0011	3118	1	0	0	1	0	0	copy fasta	PPP1R15B	chr1	204398381	204416817
PPP1R15B_chr1_204398381_204416817	0/0	t0012	3118	1	0	0	1	0	0	copy fasta	PPP1R15B	chr1	204398381	204416817
PPP1R15B_chr1_204398381_204416817	0/0	t0013	3118	1	0	1	0	0	0	copy fasta	PPP1R15B	chr1	204398381	204416817
PPP1R15B_chr1_204398381_204416817	0/0	t0014	3118	1	0	0	0	1	0	copy fasta	PPP1R15B	chr1	204398381	204416817
PPP1R15B_chr1_204398381_204416817	0/0	t0015	3118	1	0	0	1	0	0	copy fasta	PPP1R15B	chr1	204398381	204416817
PPP1R15B_chr1_204398381_204416817	0/0	t0016	3118	1	0	1	0	0	0	copy fasta	PPP1R15B	chr1	204398381	204416817
PPP1R15B_chr1_204398381_204416817	0/0	t0017	3118	1	1	0	0	0	0	copy fasta	PPP1R15B	chr1	204398381	204416817
PPP1R15B_chr1_204398381_204416817	0/0	t0018	3116	1	1	0	0	0	0	copy fasta	PPP1R15B	chr1	204398381	204416817