JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPP1R15B_chr1_204398381_204416817	0/0	t0019	3118	1	0	0	1	0	0	copy fasta	PPP1R15B	chr1	204398381	204416817
PPP1R15B_chr1_204398381_204416817	0/0	t0020	3118	1	1	0	0	0	0	copy fasta	PPP1R15B	chr1	204398381	204416817
PPP1R15B_chr1_204398381_204416817	0/1	t0021	3118	1	0	0	0	0	0	copy fasta	PPP1R15B	chr1	204398381	204416817
PPP1R15B_chr1_204398381_204416817	0/0	t0022	3118	1	0	0	1	0	0	copy fasta	PPP1R15B	chr1	204398381	204416817
PPP1R15B_chr1_204398381_204416817	0/0	t0023	3118	1	1	0	0	0	0	copy fasta	PPP1R15B	chr1	204398381	204416817
PPP1R16A_chr8_144472982_144507121	0/1	t0001	1278	128	12	28	60	8	19	copy fasta	PPP1R16A	chr8	144472982	144507121
PPP1R16A_chr8_144472982_144507121	0/0	t0002	1278	105	20	27	38	4	16	copy fasta	PPP1R16A	chr8	144472982	144507121
PPP1R16A_chr8_144472982_144507121	1/0	t0003	1278	51	10	5	35	0	0	copy fasta	PPP1R16A	chr8	144472982	144507121
PPP1R16A_chr8_144472982_144507121	0/0	t0004	1278	21	15	3	0	1	2	copy fasta	PPP1R16A	chr8	144472982	144507121
PPP1R16A_chr8_144472982_144507121	0/0	t0005	1278	13	0	4	9	0	0	copy fasta	PPP1R16A	chr8	144472982	144507121
PPP1R16A_chr8_144472982_144507121	0/0	t0006	1278	8	8	0	0	0	0	copy fasta	PPP1R16A	chr8	144472982	144507121
PPP1R16A_chr8_144472982_144507121	0/0	t0007	1278	4	4	0	0	0	0	copy fasta	PPP1R16A	chr8	144472982	144507121
PPP1R16A_chr8_144472982_144507121	0/0	t0008	1278	3	3	0	0	0	0	copy fasta	PPP1R16A	chr8	144472982	144507121
PPP1R16A_chr8_144472982_144507121	0/0	t0009	1278	3	2	1	0	0	0	copy fasta	PPP1R16A	chr8	144472982	144507121
PPP1R16A_chr8_144472982_144507121	0/0	t0010	1278	3	3	0	0	0	0	copy fasta	PPP1R16A	chr8	144472982	144507121
PPP1R16A_chr8_144472982_144507121	0/0	t0011	1278	2	0	0	0	0	2	copy fasta	PPP1R16A	chr8	144472982	144507121
PPP1R16A_chr8_144472982_144507121	0/0	t0012	1278	2	2	0	0	0	0	copy fasta	PPP1R16A	chr8	144472982	144507121
PPP1R16A_chr8_144472982_144507121	0/0	t0013	1278	1	1	0	0	0	0	copy fasta	PPP1R16A	chr8	144472982	144507121
PPP1R16A_chr8_144472982_144507121	0/0	t0014	1278	1	1	0	0	0	0	copy fasta	PPP1R16A	chr8	144472982	144507121
PPP1R16A_chr8_144472982_144507121	0/0	t0015	1278	1	1	0	0	0	0	copy fasta	PPP1R16A	chr8	144472982	144507121
PPP1R16A_chr8_144472982_144507121	0/0	t0016	1278	1	0	0	0	1	0	copy fasta	PPP1R16A	chr8	144472982	144507121
PPP1R16A_chr8_144472982_144507121	0/0	t0017	1278	1	0	0	0	0	1	copy fasta	PPP1R16A	chr8	144472982	144507121
PPP1R16A_chr8_144472982_144507121	0/0	t0018	1278	1	1	0	0	0	0	copy fasta	PPP1R16A	chr8	144472982	144507121
PPP1R16A_chr8_144472982_144507121	0/0	t0019	1278	1	1	0	0	0	0	copy fasta	PPP1R16A	chr8	144472982	144507121
PPP1R16A_chr8_144472982_144507121	0/0	t0020	1278	1	0	0	1	0	0	copy fasta	PPP1R16A	chr8	144472982	144507121
PPP1R16A_chr8_144472982_144507121	0/0	t0021	1278	1	1	0	0	0	0	copy fasta	PPP1R16A	chr8	144472982	144507121
PPP1R16A_chr8_144472982_144507121	0/0	t0022	1278	1	1	0	0	0	0	copy fasta	PPP1R16A	chr8	144472982	144507121
PPP1R16A_chr8_144472982_144507121	0/0	t0023	1278	1	1	0	0	0	0	copy fasta	PPP1R16A	chr8	144472982	144507121
PPP1R16A_chr8_144472982_144507121	0/0	t0024	1278	1	1	0	0	0	0	copy fasta	PPP1R16A	chr8	144472982	144507121
PPP1R16A_chr8_144472982_144507121	0/0	t0025	1278	1	0	0	1	0	0	copy fasta	PPP1R16A	chr8	144472982	144507121
PPP1R16B_chr20_38800697_38928024	1/0	t0001	4556	122	28	23	59	3	8	copy fasta	PPP1R16B	chr20	38800697	38928024
PPP1R16B_chr20_38800697_38928024	0/1	t0002	4558	47	4	8	31	1	2	copy fasta	PPP1R16B	chr20	38800697	38928024
PPP1R16B_chr20_38800697_38928024	0/0	t0003	4556	13	1	0	10	0	2	copy fasta	PPP1R16B	chr20	38800697	38928024
PPP1R16B_chr20_38800697_38928024	0/0	t0004	4556	13	10	2	0	0	1	copy fasta	PPP1R16B	chr20	38800697	38928024
PPP1R16B_chr20_38800697_38928024	0/0	t0005	4557	7	7	0	0	0	0	copy fasta	PPP1R16B	chr20	38800697	38928024
PPP1R16B_chr20_38800697_38928024	0/0	t0006	4556	5	5	0	0	0	0	copy fasta	PPP1R16B	chr20	38800697	38928024
PPP1R16B_chr20_38800697_38928024	0/0	t0007	4556	5	3	2	0	0	0	copy fasta	PPP1R16B	chr20	38800697	38928024
PPP1R16B_chr20_38800697_38928024	0/0	t0008	4558	4	4	0	0	0	0	copy fasta	PPP1R16B	chr20	38800697	38928024
PPP1R16B_chr20_38800697_38928024	0/0	t0009	4556	3	0	0	3	0	0	copy fasta	PPP1R16B	chr20	38800697	38928024
PPP1R16B_chr20_38800697_38928024	0/0	t0010	4558	3	2	1	0	0	0	copy fasta	PPP1R16B	chr20	38800697	38928024
PPP1R16B_chr20_38800697_38928024	0/0	t0011	4556	3	0	0	0	1	2	copy fasta	PPP1R16B	chr20	38800697	38928024
PPP1R16B_chr20_38800697_38928024	0/0	t0012	4558	2	2	0	0	0	0	copy fasta	PPP1R16B	chr20	38800697	38928024
PPP1R16B_chr20_38800697_38928024	0/0	t0013	4556	2	0	0	2	0	0	copy fasta	PPP1R16B	chr20	38800697	38928024
PPP1R16B_chr20_38800697_38928024	0/0	t0014	4556	2	2	0	0	0	0	copy fasta	PPP1R16B	chr20	38800697	38928024
PPP1R16B_chr20_38800697_38928024	0/0	t0015	4558	1	1	0	0	0	0	copy fasta	PPP1R16B	chr20	38800697	38928024
PPP1R16B_chr20_38800697_38928024	0/0	t0016	4558	1	1	0	0	0	0	copy fasta	PPP1R16B	chr20	38800697	38928024
PPP1R16B_chr20_38800697_38928024	0/0	t0017	4558	1	1	0	0	0	0	copy fasta	PPP1R16B	chr20	38800697	38928024
PPP1R16B_chr20_38800697_38928024	0/0	t0018	4558	1	0	0	0	0	1	copy fasta	PPP1R16B	chr20	38800697	38928024
PPP1R16B_chr20_38800697_38928024	0/0	t0019	4556	1	0	0	0	1	0	copy fasta	PPP1R16B	chr20	38800697	38928024
PPP1R16B_chr20_38800697_38928024	0/0	t0020	4556	1	0	0	1	0	0	copy fasta	PPP1R16B	chr20	38800697	38928024