JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPP1R16B_chr20_38800697_38928024	0/0	t0021	4556	1	1	0	0	0	0	copy fasta	PPP1R16B	chr20	38800697	38928024
PPP1R16B_chr20_38800697_38928024	0/0	t0022	4556	1	0	0	1	0	0	copy fasta	PPP1R16B	chr20	38800697	38928024
PPP1R16B_chr20_38800697_38928024	0/0	t0023	4556	1	0	0	0	0	1	copy fasta	PPP1R16B	chr20	38800697	38928024
PPP1R16B_chr20_38800697_38928024	0/0	t0024	4556	1	0	0	1	0	0	copy fasta	PPP1R16B	chr20	38800697	38928024
PPP1R16B_chr20_38800697_38928024	0/0	t0025	4556	1	1	0	0	0	0	copy fasta	PPP1R16B	chr20	38800697	38928024
PPP1R16B_chr20_38800697_38928024	0/0	t0026	4556	1	0	0	0	0	1	copy fasta	PPP1R16B	chr20	38800697	38928024
PPP1R16B_chr20_38800697_38928024	0/0	t0027	4557	1	1	0	0	0	0	copy fasta	PPP1R16B	chr20	38800697	38928024
PPP1R17_chr7_31682215_31713455	1/0	t0001	1301	162	24	37	66	8	26	copy fasta	PPP1R17	chr7	31682215	31713455
PPP1R17_chr7_31682215_31713455	0/1	t0002	1301	117	28	18	63	1	6	copy fasta	PPP1R17	chr7	31682215	31713455
PPP1R17_chr7_31682215_31713455	0/0	t0003	1301	81	4	9	58	4	6	copy fasta	PPP1R17	chr7	31682215	31713455
PPP1R17_chr7_31682215_31713455	0/0	t0004	1301	25	1	4	15	1	4	copy fasta	PPP1R17	chr7	31682215	31713455
PPP1R17_chr7_31682215_31713455	0/0	t0005	1301	17	17	0	0	0	0	copy fasta	PPP1R17	chr7	31682215	31713455
PPP1R17_chr7_31682215_31713455	0/0	t0006	1301	9	9	0	0	0	0	copy fasta	PPP1R17	chr7	31682215	31713455
PPP1R17_chr7_31682215_31713455	0/0	t0007	1301	5	0	0	5	0	0	copy fasta	PPP1R17	chr7	31682215	31713455
PPP1R17_chr7_31682215_31713455	0/0	t0008	1301	5	1	3	1	0	0	copy fasta	PPP1R17	chr7	31682215	31713455
PPP1R17_chr7_31682215_31713455	0/0	t0009	1301	4	4	0	0	0	0	copy fasta	PPP1R17	chr7	31682215	31713455
PPP1R17_chr7_31682215_31713455	0/0	t0010	1301	2	1	1	0	0	0	copy fasta	PPP1R17	chr7	31682215	31713455
PPP1R17_chr7_31682215_31713455	0/0	t0011	1301	2	2	0	0	0	0	copy fasta	PPP1R17	chr7	31682215	31713455
PPP1R17_chr7_31682215_31713455	0/0	t0012	1301	2	2	0	0	0	0	copy fasta	PPP1R17	chr7	31682215	31713455
PPP1R17_chr7_31682215_31713455	0/0	t0013	1301	2	0	2	0	0	0	copy fasta	PPP1R17	chr7	31682215	31713455
PPP1R17_chr7_31682215_31713455	0/0	t0014	1301	2	2	0	0	0	0	copy fasta	PPP1R17	chr7	31682215	31713455
PPP1R17_chr7_31682215_31713455	0/0	t0015	1301	1	1	0	0	0	0	copy fasta	PPP1R17	chr7	31682215	31713455
PPP1R17_chr7_31682215_31713455	0/0	t0016	1301	1	0	0	1	0	0	copy fasta	PPP1R17	chr7	31682215	31713455
PPP1R17_chr7_31682215_31713455	0/0	t0017	1301	1	1	0	0	0	0	copy fasta	PPP1R17	chr7	31682215	31713455
PPP1R17_chr7_31682215_31713455	0/0	t0018	1301	1	0	0	0	0	1	copy fasta	PPP1R17	chr7	31682215	31713455
PPP1R17_chr7_31682215_31713455	0/0	t0019	1301	1	0	0	1	0	0	copy fasta	PPP1R17	chr7	31682215	31713455
PPP1R17_chr7_31682215_31713455	0/0	t0020	1301	1	1	0	0	0	0	copy fasta	PPP1R17	chr7	31682215	31713455
PPP1R17_chr7_31682215_31713455	0/0	t0021	1301	1	0	0	0	0	1	copy fasta	PPP1R17	chr7	31682215	31713455
PPP1R18_chr6_30671389_30691645	0/1	t0001	1508	366	69	73	160	16	47	copy fasta	PPP1R18	chr6	30671389	30691645
PPP1R18_chr6_30671389_30691645	0/0	t0002	1508	46	7	3	35	0	1	copy fasta	PPP1R18	chr6	30671389	30691645
PPP1R18_chr6_30671389_30691645	0/0	t0003	1507	3	1	2	0	0	0	copy fasta	PPP1R18	chr6	30671389	30691645
PPP1R18_chr6_30671389_30691645	0/0	t0004	1508	2	2	0	0	0	0	copy fasta	PPP1R18	chr6	30671389	30691645
PPP1R18_chr6_30671389_30691645	0/0	t0005	1508	1	0	1	0	0	0	copy fasta	PPP1R18	chr6	30671389	30691645
PPP1R18_chr6_30671389_30691645	0/0	t0006	1508	1	0	0	1	0	0	copy fasta	PPP1R18	chr6	30671389	30691645
PPP1R18_chr6_30671389_30691645	0/0	t0007	1508	1	1	0	0	0	0	copy fasta	PPP1R18	chr6	30671389	30691645
PPP1R18_chr6_30671389_30691645	0/0	t0008	1508	1	0	0	1	0	0	copy fasta	PPP1R18	chr6	30671389	30691645
PPP1R18_chr6_30671389_30691645	0/0	t0009	1508	1	0	1	0	0	0	copy fasta	PPP1R18	chr6	30671389	30691645
PPP1R18_chr6_30671389_30691645	0/0	t0010	1508	1	1	0	0	0	0	copy fasta	PPP1R18	chr6	30671389	30691645
PPP1R18_chr6_30671389_30691645	0/0	t0011	1508	1	1	0	0	0	0	copy fasta	PPP1R18	chr6	30671389	30691645
PPP1R18_chr6_30671389_30691645	0/0	t0012	1508	1	0	0	1	0	0	copy fasta	PPP1R18	chr6	30671389	30691645
PPP1R1A_chr12_54574246_54593659	0/1	t0001	1311	384	50	76	200	18	39	copy fasta	PPP1R1A	chr12	54574246	54593659
PPP1R1A_chr12_54574246_54593659	0/0	t0002	1313	19	15	1	3	0	0	copy fasta	PPP1R1A	chr12	54574246	54593659
PPP1R1A_chr12_54574246_54593659	0/0	t0003	1311	10	10	0	0	0	0	copy fasta	PPP1R1A	chr12	54574246	54593659
PPP1R1A_chr12_54574246_54593659	0/0	t0004	1311	9	9	0	0	0	0	copy fasta	PPP1R1A	chr12	54574246	54593659
PPP1R1A_chr12_54574246_54593659	0/0	t0005	1315	3	3	0	0	0	0	copy fasta	PPP1R1A	chr12	54574246	54593659
PPP1R1A_chr12_54574246_54593659	0/0	t0006	1311	2	2	0	0	0	0	copy fasta	PPP1R1A	chr12	54574246	54593659
PPP1R1A_chr12_54574246_54593659	0/0	t0007	1313	2	2	0	0	0	0	copy fasta	PPP1R1A	chr12	54574246	54593659
PPP1R1A_chr12_54574246_54593659	0/0	t0008	1313	1	1	0	0	0	0	copy fasta	PPP1R1A	chr12	54574246	54593659
PPP1R1A_chr12_54574246_54593659	0/0	t0009	1311	1	1	0	0	0	0	copy fasta	PPP1R1A	chr12	54574246	54593659
PPP1R1A_chr12_54574246_54593659	0/0	t0010	1323	1	1	0	0	0	0	copy fasta	PPP1R1A	chr12	54574246	54593659