JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPP1R1A_chr12_54574246_54593659	0/0	t0011	1313	1	1	0	0	0	0	copy fasta	PPP1R1A	chr12	54574246	54593659
PPP1R1A_chr12_54574246_54593659	0/0	t0012	1311	1	0	0	1	0	0	copy fasta	PPP1R1A	chr12	54574246	54593659
PPP1R1A_chr12_54574246_54593659	0/0	t0013	1311	1	0	0	1	0	0	copy fasta	PPP1R1A	chr12	54574246	54593659
PPP1R1A_chr12_54574246_54593659	0/0	t0014	1313	1	0	0	1	0	0	copy fasta	PPP1R1A	chr12	54574246	54593659
PPP1R1A_chr12_54574246_54593659	0/0	t0015	1311	1	0	1	0	0	0	copy fasta	PPP1R1A	chr12	54574246	54593659
PPP1R1A_chr12_54574246_54593659	1/0	t0016	1313	1	0	0	0	0	0	copy fasta	PPP1R1A	chr12	54574246	54593659
PPP1R1A_chr12_54574246_54593659	0/0	t0017	1313	1	1	0	0	0	0	copy fasta	PPP1R1A	chr12	54574246	54593659
PPP1R1A_chr12_54574246_54593659	0/0	t0018	1311	1	1	0	0	0	0	copy fasta	PPP1R1A	chr12	54574246	54593659
PPP1R1A_chr12_54574246_54593659	0/0	t0019	1311	1	0	0	1	0	0	copy fasta	PPP1R1A	chr12	54574246	54593659
PPP1R1A_chr12_54574246_54593659	0/0	t0020	1311	1	0	0	1	0	0	copy fasta	PPP1R1A	chr12	54574246	54593659
PPP1R1A_chr12_54574246_54593659	0/0	t0021	1311	1	0	0	0	0	1	copy fasta	PPP1R1A	chr12	54574246	54593659
PPP1R1A_chr12_54574246_54593659	0/0	t0022	1311	1	1	0	0	0	0	copy fasta	PPP1R1A	chr12	54574246	54593659
PPP1R1B_chr17_39621952_39641624	1/1	t0001	1201	292	45	65	133	14	33	copy fasta	PPP1R1B	chr17	39621952	39641624
PPP1R1B_chr17_39621952_39641624	0/0	t0002	1201	18	18	0	0	0	0	copy fasta	PPP1R1B	chr17	39621952	39641624
PPP1R1B_chr17_39621952_39641624	0/0	t0003	1201	15	13	1	0	0	1	copy fasta	PPP1R1B	chr17	39621952	39641624
PPP1R1B_chr17_39621952_39641624	0/0	t0004	1201	9	7	1	0	0	1	copy fasta	PPP1R1B	chr17	39621952	39641624
PPP1R1B_chr17_39621952_39641624	0/0	t0005	1201	4	0	0	4	0	0	copy fasta	PPP1R1B	chr17	39621952	39641624
PPP1R1B_chr17_39621952_39641624	0/0	t0006	1201	3	3	0	0	0	0	copy fasta	PPP1R1B	chr17	39621952	39641624
PPP1R1B_chr17_39621952_39641624	0/0	t0007	1201	2	1	1	0	0	0	copy fasta	PPP1R1B	chr17	39621952	39641624
PPP1R1B_chr17_39621952_39641624	0/0	t0008	1201	1	0	0	0	0	1	copy fasta	PPP1R1B	chr17	39621952	39641624
PPP1R1B_chr17_39621952_39641624	0/0	t0009	1201	1	1	0	0	0	0	copy fasta	PPP1R1B	chr17	39621952	39641624
PPP1R1B_chr17_39621952_39641624	0/0	t0010	1201	1	0	0	1	0	0	copy fasta	PPP1R1B	chr17	39621952	39641624
PPP1R1C_chr2_181980853_182122756	0/0	t0001	724	122	24	23	53	10	12	copy fasta	PPP1R1C	chr2	181980853	182122756
PPP1R1C_chr2_181980853_182122756	1/0	t0002	720	95	16	13	52	5	8	copy fasta	PPP1R1C	chr2	181980853	182122756
PPP1R1C_chr2_181980853_182122756	0/1	t0003	714	72	28	9	31	1	2	copy fasta	PPP1R1C	chr2	181980853	182122756
PPP1R1C_chr2_181980853_182122756	0/0	t0004	722	39	8	11	20	0	0	copy fasta	PPP1R1C	chr2	181980853	182122756
PPP1R1C_chr2_181980853_182122756	0/0	t0005	726	6	5	1	0	0	0	copy fasta	PPP1R1C	chr2	181980853	182122756
PPP1R1C_chr2_181980853_182122756	0/0	t0006	720	3	0	1	0	0	2	copy fasta	PPP1R1C	chr2	181980853	182122756
PPP1R1C_chr2_181980853_182122756	0/0	t0007	724	3	3	0	0	0	0	copy fasta	PPP1R1C	chr2	181980853	182122756
PPP1R1C_chr2_181980853_182122756	0/0	t0008	724	2	0	0	2	0	0	copy fasta	PPP1R1C	chr2	181980853	182122756
PPP1R1C_chr2_181980853_182122756	0/0	t0009	720	1	1	0	0	0	0	copy fasta	PPP1R1C	chr2	181980853	182122756
PPP1R1C_chr2_181980853_182122756	0/0	t0010	720	1	1	0	0	0	0	copy fasta	PPP1R1C	chr2	181980853	182122756
PPP1R21_chr2_48435766_48520386	0/0	t0001	841	80	1	13	51	5	10	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	t0002	839	47	18	10	5	2	12	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	1/0	t0003	831	33	4	3	22	0	3	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	t0004	848	26	0	9	16	0	1	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	t0005	834	25	0	0	25	0	0	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	t0006	843	25	13	2	8	1	1	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	t0007	845	21	10	1	6	2	2	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	t0008	849	10	5	3	0	2	0	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	t0009	826	7	0	3	0	3	1	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	t0010	847	7	4	1	1	0	1	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	t0011	851	5	0	2	3	0	0	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	t0012	837	5	0	2	2	1	0	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/1	t0013	844	4	0	2	0	1	0	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	t0014	839	4	3	1	0	0	0	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	t0015	846	4	1	2	0	0	1	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	t0016	844	4	0	0	3	1	0	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	t0017	847	3	2	1	0	0	0	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	t0018	839	3	1	0	0	0	2	copy fasta	PPP1R21	chr2	48435766	48520386