JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPP1R21_chr2_48435766_48520386	0/0	t0019	831	3	1	2	0	0	0	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	t0020	851	3	0	1	0	0	2	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	t0021	852	3	2	0	1	0	0	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	t0022	850	3	0	0	3	0	0	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	t0023	842	3	0	3	0	0	0	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	t0024	852	3	0	0	3	0	0	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	t0025	846	3	1	0	2	0	0	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	t0026	833	3	0	0	1	0	2	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	t0027	840	2	0	2	0	0	0	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	t0028	835	2	1	0	0	0	1	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	t0029	843	2	2	0	0	0	0	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	t0030	833	2	2	0	0	0	0	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	t0031	828	2	2	0	0	0	0	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	t0032	852	2	0	0	2	0	0	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	t0033	837	2	0	0	1	0	1	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	t0034	838	2	2	0	0	0	0	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	t0035	835	2	1	1	0	0	0	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	t0036	829	1	1	0	0	0	0	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	t0037	856	1	0	0	1	0	0	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	t0038	854	1	0	0	1	0	0	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	t0039	853	1	0	0	0	0	1	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	t0040	845	1	0	0	0	0	1	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	t0041	838	1	1	0	0	0	0	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	t0042	841	1	0	0	1	0	0	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	t0043	841	1	0	0	1	0	0	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	t0044	845	1	1	0	0	0	0	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	t0045	833	1	1	0	0	0	0	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	t0046	848	1	1	0	0	0	0	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	t0047	842	1	0	0	1	0	0	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	t0048	863	1	0	0	1	0	0	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	t0049	859	1	0	1	0	0	0	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	t0050	857	1	1	0	0	0	0	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	t0051	829	1	0	0	1	0	0	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R21_chr2_48435766_48520386	0/0	t0052	845	1	0	1	0	0	0	copy fasta	PPP1R21	chr2	48435766	48520386
PPP1R26_chr9_135474782_135493892	1/1	t0001	1322	193	39	43	74	15	20	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	t0002	1322	97	6	12	75	0	4	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	t0003	1322	67	7	15	27	2	16	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	t0004	1322	26	19	1	6	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	t0005	1322	22	6	8	5	0	3	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	t0006	1322	11	7	3	1	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	t0007	1322	7	0	0	7	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	t0008	1322	5	0	0	5	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	t0009	1322	4	0	0	3	0	1	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	t0010	1322	3	3	0	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	t0011	1322	3	3	0	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	t0012	1322	3	3	0	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	t0013	1323	3	0	0	2	0	1	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	t0014	1323	3	0	1	2	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	t0015	1322	2	1	0	1	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	t0016	1323	2	0	0	2	0	0	copy fasta	PPP1R26	chr9	135474782	135493892