JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPP1R26_chr9_135474782_135493892	0/0	t0017	1322	2	0	0	0	0	2	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	t0018	1322	1	1	0	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	t0019	1322	1	0	0	1	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	t0020	1322	1	0	0	0	1	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	t0021	1322	1	1	0	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	t0022	1322	1	1	0	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	t0023	1322	1	1	0	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	t0024	1322	1	0	0	1	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	t0025	1323	1	0	0	0	0	1	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R26_chr9_135474782_135493892	0/0	t0026	1322	1	0	1	0	0	0	copy fasta	PPP1R26	chr9	135474782	135493892
PPP1R27_chr17_81828492_81840050	1/1	t0001	335	211	37	47	74	11	40	copy fasta	PPP1R27	chr17	81828492	81840050
PPP1R27_chr17_81828492_81840050	0/0	t0002	335	129	36	31	56	3	3	copy fasta	PPP1R27	chr17	81828492	81840050
PPP1R27_chr17_81828492_81840050	0/0	t0003	335	1	1	0	0	0	0	copy fasta	PPP1R27	chr17	81828492	81840050
PPP1R27_chr17_81828492_81840050	0/0	t0004	335	1	1	0	0	0	0	copy fasta	PPP1R27	chr17	81828492	81840050
PPP1R27_chr17_81828492_81840050	0/0	t0005	335	1	1	0	0	0	0	copy fasta	PPP1R27	chr17	81828492	81840050
PPP1R27_chr17_81828492_81840050	0/0	t0006	335	1	0	0	0	0	1	copy fasta	PPP1R27	chr17	81828492	81840050
PPP1R27_chr17_81828492_81840050	0/0	t0007	335	1	0	0	1	0	0	copy fasta	PPP1R27	chr17	81828492	81840050
PPP1R27_chr17_81828492_81840050	0/0	t0008	335	1	0	0	1	0	0	copy fasta	PPP1R27	chr17	81828492	81840050
PPP1R2B_chr5_156845295_156857528	1/0	t0001	1617	337	54	67	166	15	34	copy fasta	PPP1R2B	chr5	156845295	156857528
PPP1R2B_chr5_156845295_156857528	0/1	t0002	1617	46	8	3	27	2	5	copy fasta	PPP1R2B	chr5	156845295	156857528
PPP1R2B_chr5_156845295_156857528	0/0	t0003	1617	17	16	1	0	0	0	copy fasta	PPP1R2B	chr5	156845295	156857528
PPP1R2B_chr5_156845295_156857528	0/0	t0004	1617	7	6	1	0	0	0	copy fasta	PPP1R2B	chr5	156845295	156857528
PPP1R2B_chr5_156845295_156857528	0/0	t0005	1617	5	2	3	0	0	0	copy fasta	PPP1R2B	chr5	156845295	156857528
PPP1R2B_chr5_156845295_156857528	0/0	t0006	1617	5	5	0	0	0	0	copy fasta	PPP1R2B	chr5	156845295	156857528
PPP1R2B_chr5_156845295_156857528	0/0	t0007	1617	1	0	0	1	0	0	copy fasta	PPP1R2B	chr5	156845295	156857528
PPP1R2B_chr5_156845295_156857528	0/0	t0008	1617	1	0	0	0	0	1	copy fasta	PPP1R2B	chr5	156845295	156857528
PPP1R2B_chr5_156845295_156857528	0/0	t0009	1617	1	1	0	0	0	0	copy fasta	PPP1R2B	chr5	156845295	156857528
PPP1R2B_chr5_156845295_156857528	0/0	t0010	1617	1	1	0	0	0	0	copy fasta	PPP1R2B	chr5	156845295	156857528
PPP1R2B_chr5_156845295_156857528	0/0	t0011	1617	1	0	1	0	0	0	copy fasta	PPP1R2B	chr5	156845295	156857528
PPP1R2B_chr5_156845295_156857528	0/0	t0012	1617	1	1	0	0	0	0	copy fasta	PPP1R2B	chr5	156845295	156857528
PPP1R2B_chr5_156845295_156857528	0/0	t0013	1617	1	1	0	0	0	0	copy fasta	PPP1R2B	chr5	156845295	156857528
PPP1R2B_chr5_156845295_156857528	0/0	t0014	1617	1	1	0	0	0	0	copy fasta	PPP1R2B	chr5	156845295	156857528
PPP1R2B_chr5_156845295_156857528	0/0	t0015	1617	1	0	0	0	1	0	copy fasta	PPP1R2B	chr5	156845295	156857528
PPP1R2B_chr5_156845295_156857528	0/0	t0016	1617	1	0	0	1	0	0	copy fasta	PPP1R2B	chr5	156845295	156857528
PPP1R2B_chr5_156845295_156857528	0/0	t0017	1617	1	1	0	0	0	0	copy fasta	PPP1R2B	chr5	156845295	156857528
PPP1R2B_chr5_156845295_156857528	0/0	t0018	1617	1	1	0	0	0	0	copy fasta	PPP1R2B	chr5	156845295	156857528
PPP1R2B_chr5_156845295_156857528	0/0	t0019	1617	1	0	0	1	0	0	copy fasta	PPP1R2B	chr5	156845295	156857528
PPP1R2C_chrX_42772366_42783163	1/1	t0001	190	332	74	54	166	9	27	copy fasta	PPP1R2C	chrX	42772366	42783163
PPP1R2C_chrX_42772366_42783163	0/0	t0002	191	1	0	0	1	0	0	copy fasta	PPP1R2C	chrX	42772366	42783163
PPP1R2_chr3_195509428_195548325	0/0	t0001	2768	118	4	25	70	6	13	copy fasta	PPP1R2	chr3	195509428	195548325
PPP1R2_chr3_195509428_195548325	0/0	t0002	2768	64	11	4	41	2	6	copy fasta	PPP1R2	chr3	195509428	195548325
PPP1R2_chr3_195509428_195548325	0/0	t0003	2770	39	11	8	9	3	8	copy fasta	PPP1R2	chr3	195509428	195548325
PPP1R2_chr3_195509428_195548325	0/0	t0004	2770	35	1	3	23	0	8	copy fasta	PPP1R2	chr3	195509428	195548325
PPP1R2_chr3_195509428_195548325	1/0	t0005	2769	33	13	8	2	5	4	copy fasta	PPP1R2	chr3	195509428	195548325
PPP1R2_chr3_195509428_195548325	0/0	t0006	2770	10	10	0	0	0	0	copy fasta	PPP1R2	chr3	195509428	195548325
PPP1R2_chr3_195509428_195548325	0/0	t0007	2768	8	6	0	2	0	0	copy fasta	PPP1R2	chr3	195509428	195548325
PPP1R2_chr3_195509428_195548325	0/0	t0008	2768	7	7	0	0	0	0	copy fasta	PPP1R2	chr3	195509428	195548325
PPP1R2_chr3_195509428_195548325	0/0	t0009	2768	6	0	0	6	0	0	copy fasta	PPP1R2	chr3	195509428	195548325
PPP1R2_chr3_195509428_195548325	0/0	t0010	2768	5	5	0	0	0	0	copy fasta	PPP1R2	chr3	195509428	195548325
PPP1R2_chr3_195509428_195548325	0/1	t0011	2771	5	0	4	0	0	0	copy fasta	PPP1R2	chr3	195509428	195548325