JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPP1R2_chr3_195509428_195548325	0/0	t0012	2768	4	0	0	4	0	0	copy fasta	PPP1R2	chr3	195509428	195548325
PPP1R2_chr3_195509428_195548325	0/0	t0013	2770	4	4	0	0	0	0	copy fasta	PPP1R2	chr3	195509428	195548325
PPP1R2_chr3_195509428_195548325	0/0	t0014	2770	4	1	2	0	1	0	copy fasta	PPP1R2	chr3	195509428	195548325
PPP1R2_chr3_195509428_195548325	0/0	t0015	2768	4	0	0	4	0	0	copy fasta	PPP1R2	chr3	195509428	195548325
PPP1R2_chr3_195509428_195548325	0/0	t0016	2769	3	2	0	0	1	0	copy fasta	PPP1R2	chr3	195509428	195548325
PPP1R2_chr3_195509428_195548325	0/0	t0017	2770	3	3	0	0	0	0	copy fasta	PPP1R2	chr3	195509428	195548325
PPP1R2_chr3_195509428_195548325	0/0	t0018	2768	3	3	0	0	0	0	copy fasta	PPP1R2	chr3	195509428	195548325
PPP1R2_chr3_195509428_195548325	0/0	t0019	2769	2	2	0	0	0	0	copy fasta	PPP1R2	chr3	195509428	195548325
PPP1R2_chr3_195509428_195548325	0/0	t0020	2768	2	1	0	1	0	0	copy fasta	PPP1R2	chr3	195509428	195548325
PPP1R2_chr3_195509428_195548325	0/0	t0021	2770	2	0	1	0	0	1	copy fasta	PPP1R2	chr3	195509428	195548325
PPP1R2_chr3_195509428_195548325	0/0	t0022	2768	2	0	0	0	0	2	copy fasta	PPP1R2	chr3	195509428	195548325
PPP1R2_chr3_195509428_195548325	0/0	t0023	2768	2	0	2	0	0	0	copy fasta	PPP1R2	chr3	195509428	195548325
PPP1R2_chr3_195509428_195548325	0/0	t0024	2770	2	2	0	0	0	0	copy fasta	PPP1R2	chr3	195509428	195548325
PPP1R2_chr3_195509428_195548325	0/0	t0025	2769	2	2	0	0	0	0	copy fasta	PPP1R2	chr3	195509428	195548325
PPP1R2_chr3_195509428_195548325	0/0	t0026	2768	2	0	0	2	0	0	copy fasta	PPP1R2	chr3	195509428	195548325
PPP1R2_chr3_195509428_195548325	0/0	t0027	2768	1	0	0	1	0	0	copy fasta	PPP1R2	chr3	195509428	195548325
PPP1R2_chr3_195509428_195548325	0/0	t0028	2769	1	0	1	0	0	0	copy fasta	PPP1R2	chr3	195509428	195548325
PPP1R2_chr3_195509428_195548325	0/0	t0029	2770	1	0	1	0	0	0	copy fasta	PPP1R2	chr3	195509428	195548325
PPP1R2_chr3_195509428_195548325	0/0	t0030	2770	1	1	0	0	0	0	copy fasta	PPP1R2	chr3	195509428	195548325
PPP1R2_chr3_195509428_195548325	0/0	t0031	2768	1	1	0	0	0	0	copy fasta	PPP1R2	chr3	195509428	195548325
PPP1R2_chr3_195509428_195548325	0/0	t0032	2769	1	0	0	0	0	1	copy fasta	PPP1R2	chr3	195509428	195548325
PPP1R2_chr3_195509428_195548325	0/0	t0033	2771	1	1	0	0	0	0	copy fasta	PPP1R2	chr3	195509428	195548325
PPP1R2_chr3_195509428_195548325	0/0	t0034	2770	1	0	0	1	0	0	copy fasta	PPP1R2	chr3	195509428	195548325
PPP1R2_chr3_195509428_195548325	0/0	t0035	2771	1	0	1	0	0	0	copy fasta	PPP1R2	chr3	195509428	195548325
PPP1R2_chr3_195509428_195548325	0/0	t0036	2768	1	1	0	0	0	0	copy fasta	PPP1R2	chr3	195509428	195548325
PPP1R2_chr3_195509428_195548325	0/0	t0037	2770	1	1	0	0	0	0	copy fasta	PPP1R2	chr3	195509428	195548325
PPP1R2_chr3_195509428_195548325	0/0	t0038	2770	1	0	0	0	0	1	copy fasta	PPP1R2	chr3	195509428	195548325
PPP1R2_chr3_195509428_195548325	0/0	t0039	2768	1	0	0	1	0	0	copy fasta	PPP1R2	chr3	195509428	195548325
PPP1R2_chr3_195509428_195548325	0/0	t0040	2768	1	0	0	1	0	0	copy fasta	PPP1R2	chr3	195509428	195548325
PPP1R2_chr3_195509428_195548325	0/0	t0041	2768	1	0	0	1	0	0	copy fasta	PPP1R2	chr3	195509428	195548325
PPP1R2_chr3_195509428_195548325	0/0	t0042	2770	1	1	0	0	0	0	copy fasta	PPP1R2	chr3	195509428	195548325
PPP1R2_chr3_195509428_195548325	0/0	t0043	2769	1	0	0	1	0	0	copy fasta	PPP1R2	chr3	195509428	195548325
PPP1R32_chr11_61476120_61495928	1/1	t0001	255	292	96	63	87	10	34	copy fasta	PPP1R32	chr11	61476120	61495928
PPP1R32_chr11_61476120_61495928	0/0	t0002	255	1	0	1	0	0	0	copy fasta	PPP1R32	chr11	61476120	61495928
PPP1R32_chr11_61476120_61495928	0/0	t0003	255	1	0	0	1	0	0	copy fasta	PPP1R32	chr11	61476120	61495928
PPP1R35_chr7_100430282_100441497	1/1	t0001	202	327	88	58	121	14	44	copy fasta	PPP1R35	chr7	100430282	100441497
PPP1R35_chr7_100430282_100441497	0/0	t0002	202	6	0	0	6	0	0	copy fasta	PPP1R35	chr7	100430282	100441497
PPP1R35_chr7_100430282_100441497	0/0	t0003	202	1	0	0	1	0	0	copy fasta	PPP1R35	chr7	100430282	100441497
PPP1R36_chr14_64544961_64594381	0/1	t0001	81	246	62	49	98	11	25	copy fasta	PPP1R36	chr14	64544961	64594381
PPP1R36_chr14_64544961_64594381	1/0	t0002	81	77	21	19	22	1	13	copy fasta	PPP1R36	chr14	64544961	64594381
PPP1R36_chr14_64544961_64594381	0/0	t0003	81	4	2	2	0	0	0	copy fasta	PPP1R36	chr14	64544961	64594381
PPP1R36_chr14_64544961_64594381	0/0	t0004	81	1	1	0	0	0	0	copy fasta	PPP1R36	chr14	64544961	64594381
PPP1R37_chr19_45088179_45152285	0/0	t0001	871	111	39	24	34	5	9	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R37_chr19_45088179_45152285	1/1	t0002	871	85	5	20	45	2	11	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R37_chr19_45088179_45152285	0/0	t0003	871	41	27	6	1	2	5	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R37_chr19_45088179_45152285	0/0	t0004	871	25	3	4	12	1	5	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R37_chr19_45088179_45152285	0/0	t0005	871	25	0	8	17	0	0	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R37_chr19_45088179_45152285	0/0	t0006	871	14	1	8	0	1	4	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R37_chr19_45088179_45152285	0/0	t0007	871	14	14	0	0	0	0	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R37_chr19_45088179_45152285	0/0	t0008	871	6	3	3	0	0	0	copy fasta	PPP1R37	chr19	45088179	45152285