Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ACBD5_chr10_27190214_27245797	0/0	t0015	2326	1	0	1	0	0	0	copy fasta	ACBD5	chr10	27190214	27245797
ACBD5_chr10_27190214_27245797	0/0	t0016	2326	1	0	1	0	0	0	copy fasta	ACBD5	chr10	27190214	27245797
ACBD5_chr10_27190214_27245797	0/0	t0017	2326	1	1	0	0	0	0	copy fasta	ACBD5	chr10	27190214	27245797
ACBD5_chr10_27190214_27245797	0/0	t0018	2325	1	0	0	1	0	0	copy fasta	ACBD5	chr10	27190214	27245797
ACBD5_chr10_27190214_27245797	0/0	t0019	2323	1	0	0	1	0	0	copy fasta	ACBD5	chr10	27190214	27245797
ACBD5_chr10_27190214_27245797	0/0	t0020	2324	1	1	0	0	0	0	copy fasta	ACBD5	chr10	27190214	27245797
ACBD6_chr1_180283230_180507577	1/1	t0001	445	274	61	50	134	7	20	copy fasta	ACBD6	chr1	180283230	180507577
ACBD6_chr1_180283230_180507577	0/0	t0002	445	55	23	12	15	1	4	copy fasta	ACBD6	chr1	180283230	180507577
ACBD6_chr1_180283230_180507577	0/0	t0003	456	2	2	0	0	0	0	copy fasta	ACBD6	chr1	180283230	180507577
ACBD6_chr1_180283230_180507577	0/0	t0004	445	1	0	0	1	0	0	copy fasta	ACBD6	chr1	180283230	180507577
ACBD6_chr1_180283230_180507577	0/0	t0005	445	1	0	0	1	0	0	copy fasta	ACBD6	chr1	180283230	180507577
ACBD6_chr1_180283230_180507577	0/0	t0006	433	1	0	0	1	0	0	copy fasta	ACBD6	chr1	180283230	180507577
ACBD7_chr10_15070475_15093776	0/0	t0001	3100	128	11	17	83	4	13	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0002	3102	75	5	16	49	3	2	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0003	3100	58	26	14	14	3	1	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0004	3104	29	10	12	0	0	7	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	1/1	t0005	3104	25	0	13	1	5	4	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0006	3101	11	1	3	0	3	4	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0007	3102	8	8	0	0	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0008	3100	7	0	0	7	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0009	3101	6	0	1	3	0	2	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0010	3102	5	0	0	5	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0011	3104	5	5	0	0	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0012	3104	4	4	0	0	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0013	3103	3	0	0	2	0	1	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0014	3101	3	2	0	1	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0015	3101	3	0	0	1	0	2	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0016	3100	3	3	0	0	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0017	3101	3	0	0	2	0	1	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0018	3100	3	2	1	0	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0019	3105	2	0	1	1	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0020	3098	2	0	0	2	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0021	3100	1	0	0	1	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0022	3102	1	0	1	0	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0023	3104	1	1	0	0	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0024	3101	1	1	0	0	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0025	3101	1	1	0	0	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0026	3080	1	0	0	1	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0027	3103	1	1	0	0	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0028	3102	1	1	0	0	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0029	3103	1	1	0	0	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0030	3104	1	1	0	0	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0031	3103	1	1	0	0	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0032	3103	1	0	1	0	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0033	3104	1	1	0	0	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0034	3104	1	0	1	0	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0035	3102	1	1	0	0	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0036	3102	1	0	0	1	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0037	3102	1	0	0	1	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0038	3104	1	0	0	0	0	1	copy fasta	ACBD7	chr10	15070475	15093776