Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATP2B4_chr1_203621832_203749081	0/0	t0043	5080	1	1	0	0	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0044	5078	1	0	0	1	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0045	5078	1	1	0	0	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0046	5080	1	1	0	0	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0047	5080	1	0	0	1	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0048	5080	1	0	0	1	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0049	5080	1	0	0	0	0	1	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0050	5078	1	1	0	0	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0051	5079	1	1	0	0	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0052	5079	1	0	0	0	0	1	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0053	5078	1	0	0	1	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0054	5078	1	0	0	1	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0055	5079	1	1	0	0	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0056	5079	1	1	0	0	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0057	5077	1	1	0	0	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0058	5079	1	0	0	0	0	1	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0059	5080	1	1	0	0	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0060	5080	1	1	0	0	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	t0061	5080	1	0	0	1	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2C1_chr3_130889084_131008150	1/1	t0001	2235	366	83	59	175	14	33	copy fasta	ATP2C1	chr3	130889084	131008150
ATP2C1_chr3_130889084_131008150	0/0	t0002	2230	4	3	0	1	0	0	copy fasta	ATP2C1	chr3	130889084	131008150
ATP2C1_chr3_130889084_131008150	0/0	t0003	2235	2	2	0	0	0	0	copy fasta	ATP2C1	chr3	130889084	131008150
ATP2C1_chr3_130889084_131008150	0/0	t0004	2235	2	0	0	2	0	0	copy fasta	ATP2C1	chr3	130889084	131008150
ATP2C1_chr3_130889084_131008150	0/0	t0005	2235	1	0	1	0	0	0	copy fasta	ATP2C1	chr3	130889084	131008150
ATP2C1_chr3_130889084_131008150	0/0	t0006	2235	1	0	0	0	0	1	copy fasta	ATP2C1	chr3	130889084	131008150
ATP2C1_chr3_130889084_131008150	0/0	t0007	2235	1	0	0	1	0	0	copy fasta	ATP2C1	chr3	130889084	131008150
ATP2C1_chr3_130889084_131008150	0/0	t0008	2235	1	0	0	1	0	0	copy fasta	ATP2C1	chr3	130889084	131008150
ATP2C1_chr3_130889084_131008150	0/0	t0009	2235	1	1	0	0	0	0	copy fasta	ATP2C1	chr3	130889084	131008150
ATP2C1_chr3_130889084_131008150	0/0	t0010	2235	1	1	0	0	0	0	copy fasta	ATP2C1	chr3	130889084	131008150
ATP2C1_chr3_130889084_131008150	0/0	t0011	2235	1	0	0	1	0	0	copy fasta	ATP2C1	chr3	130889084	131008150
ATP2C1_chr3_130889084_131008150	0/0	t0012	2235	1	0	0	1	0	0	copy fasta	ATP2C1	chr3	130889084	131008150
ATP2C2_chr16_84363538_84469187	1/0	t0001	534	257	60	68	80	11	37	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	t0002	534	118	25	3	82	1	7	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	t0003	534	37	2	9	25	0	1	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	t0004	534	6	6	0	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	t0005	534	2	0	0	2	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	t0006	534	2	2	0	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	t0007	534	2	0	0	1	0	1	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	t0008	534	1	0	0	1	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	t0009	534	1	0	0	0	0	1	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	t0010	534	1	1	0	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/1	t0011	534	1	0	0	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	t0012	534	1	0	0	0	1	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	t0013	534	1	0	0	0	0	1	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	t0014	534	1	0	0	0	1	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	t0015	534	1	0	0	1	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP4A_chr19_35545031_35568658	1/0	t0001	614	392	95	61	182	14	39	copy fasta	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/1	t0002	614	31	0	14	8	0	8	copy fasta	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	t0003	614	1	0	1	0	0	0	copy fasta	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	t0004	614	1	1	0	0	0	0	copy fasta	ATP4A	chr19	35545031	35568658