JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPP1R37_chr19_45088179_45152285	0/0	t0009	871	4	1	2	0	1	0	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R37_chr19_45088179_45152285	0/0	t0010	871	4	0	0	0	0	4	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R37_chr19_45088179_45152285	0/0	t0011	871	2	0	0	2	0	0	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R37_chr19_45088179_45152285	0/0	t0012	871	2	2	0	0	0	0	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R37_chr19_45088179_45152285	0/0	t0013	871	1	0	0	1	0	0	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R37_chr19_45088179_45152285	0/0	t0014	871	1	1	0	0	0	0	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R37_chr19_45088179_45152285	0/0	t0015	871	1	1	0	0	0	0	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R37_chr19_45088179_45152285	0/0	t0016	871	1	0	0	1	0	0	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R37_chr19_45088179_45152285	0/0	t0017	871	1	1	0	0	0	0	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R37_chr19_45088179_45152285	0/0	t0018	871	1	1	0	0	0	0	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R37_chr19_45088179_45152285	0/0	t0019	871	1	0	1	0	0	0	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R37_chr19_45088179_45152285	0/0	t0020	871	1	1	0	0	0	0	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R37_chr19_45088179_45152285	0/0	t0021	871	1	0	0	1	0	0	copy fasta	PPP1R37	chr19	45088179	45152285
PPP1R3A_chr7_113871777_113924009	0/1	t0001	965	159	41	23	68	6	20	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	1/0	t0002	960	118	30	22	54	3	8	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	0/0	t0003	962	5	1	3	0	1	0	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	0/0	t0004	965	5	3	2	0	0	0	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	0/0	t0005	963	3	0	2	0	0	1	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	0/0	t0006	965	3	0	2	0	0	1	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3A_chr7_113871777_113924009	0/0	t0007	965	1	1	0	0	0	0	copy fasta	PPP1R3A	chr7	113871777	113924009
PPP1R3B_chr8_9131255_9155658	0/0	t0001	4654	163	4	28	118	4	9	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	1/0	t0002	4653	107	43	23	29	2	9	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0003	4653	18	3	3	0	5	7	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0004	4652	17	1	1	9	0	6	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0005	4653	14	0	8	0	4	2	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0006	4653	13	0	1	11	1	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0007	4651	12	0	1	7	0	4	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0008	4654	12	0	0	12	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/1	t0009	4653	6	0	5	0	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0010	4653	4	0	3	0	0	1	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0011	4653	4	0	3	0	1	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0012	4653	3	3	0	0	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0013	4653	3	0	0	3	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0014	4653	3	3	0	0	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0015	4426	2	2	0	0	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0016	4653	2	2	0	0	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0017	4653	2	2	0	0	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0018	4653	2	0	0	0	0	2	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0019	4653	2	2	0	0	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0020	4655	2	2	0	0	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0021	4653	2	2	0	0	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0022	4654	2	0	0	2	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0023	4654	2	2	0	0	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0024	4654	2	0	0	2	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0025	4655	1	1	0	0	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0026	4655	1	1	0	0	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0027	4653	1	1	0	0	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0028	4653	1	1	0	0	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0029	4655	1	1	0	0	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0030	4655	1	1	0	0	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658