JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPP1R3B_chr8_9131255_9155658	0/0	t0031	4653	1	1	0	0	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0032	4655	1	1	0	0	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0033	4654	1	1	0	0	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0034	4652	1	1	0	0	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0035	4651	1	0	0	0	0	1	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0036	4654	1	0	0	1	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0037	4653	1	0	0	1	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0038	4653	1	0	0	1	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0039	4653	1	0	0	1	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0040	4653	1	0	1	0	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0041	4653	1	1	0	0	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0042	4653	1	1	0	0	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0043	4653	1	1	0	0	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0044	4653	1	0	0	1	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0045	4653	1	0	0	1	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0046	4653	1	0	1	0	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0047	4653	1	0	0	0	0	1	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0048	4653	1	0	1	0	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0049	4653	1	1	0	0	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0050	4653	1	0	0	0	0	1	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0051	4654	1	0	0	1	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0052	4651	1	0	0	0	0	1	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0053	4653	1	0	1	0	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0054	4654	1	0	0	1	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0055	4654	1	0	0	0	0	1	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0056	4654	1	0	0	1	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0057	4654	1	0	0	1	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0058	4654	1	0	0	1	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0059	4654	1	0	0	0	0	1	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0060	4654	1	0	0	1	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0061	4654	1	0	0	1	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0062	4654	1	0	0	0	1	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0063	4654	1	0	0	1	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0064	4654	1	0	0	0	0	1	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0065	4654	1	0	0	1	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0066	4652	1	0	0	1	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0067	4652	1	0	0	0	0	1	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0068	4652	1	1	0	0	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3B_chr8_9131255_9155658	0/0	t0069	4654	1	0	0	1	0	0	copy fasta	PPP1R3B	chr8	9131255	9155658
PPP1R3C_chr10_91623442_91638071	1/0	t0001	1588	298	65	66	127	12	27	copy fasta	PPP1R3C	chr10	91623442	91638071
PPP1R3C_chr10_91623442_91638071	0/1	t0002	1588	24	11	5	2	3	2	copy fasta	PPP1R3C	chr10	91623442	91638071
PPP1R3C_chr10_91623442_91638071	0/0	t0003	1588	11	10	1	0	0	0	copy fasta	PPP1R3C	chr10	91623442	91638071
PPP1R3C_chr10_91623442_91638071	0/0	t0004	1588	7	5	2	0	0	0	copy fasta	PPP1R3C	chr10	91623442	91638071
PPP1R3C_chr10_91623442_91638071	0/0	t0005	1588	5	0	2	0	0	3	copy fasta	PPP1R3C	chr10	91623442	91638071
PPP1R3C_chr10_91623442_91638071	0/0	t0006	1588	3	0	1	0	2	0	copy fasta	PPP1R3C	chr10	91623442	91638071
PPP1R3C_chr10_91623442_91638071	0/0	t0007	1588	2	2	0	0	0	0	copy fasta	PPP1R3C	chr10	91623442	91638071
PPP1R3C_chr10_91623442_91638071	0/0	t0008	1588	1	0	0	1	0	0	copy fasta	PPP1R3C	chr10	91623442	91638071
PPP1R3C_chr10_91623442_91638071	0/0	t0009	1588	1	0	0	1	0	0	copy fasta	PPP1R3C	chr10	91623442	91638071
PPP1R3C_chr10_91623442_91638071	0/0	t0010	1588	1	0	0	0	1	0	copy fasta	PPP1R3C	chr10	91623442	91638071
PPP1R3C_chr10_91623442_91638071	0/0	t0011	1588	1	1	0	0	0	0	copy fasta	PPP1R3C	chr10	91623442	91638071