JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPP1R3C_chr10_91623442_91638071	0/0	t0012	1588	1	0	0	1	0	0	copy fasta	PPP1R3C	chr10	91623442	91638071
PPP1R3C_chr10_91623442_91638071	0/0	t0013	1588	1	0	0	1	0	0	copy fasta	PPP1R3C	chr10	91623442	91638071
PPP1R3C_chr10_91623442_91638071	0/0	t0014	1588	1	0	1	0	0	0	copy fasta	PPP1R3C	chr10	91623442	91638071
PPP1R3C_chr10_91623442_91638071	0/0	t0015	1588	1	1	0	0	0	0	copy fasta	PPP1R3C	chr10	91623442	91638071
PPP1R3C_chr10_91623442_91638071	0/0	t0016	1588	1	0	0	1	0	0	copy fasta	PPP1R3C	chr10	91623442	91638071
PPP1R3C_chr10_91623442_91638071	0/0	t0017	1588	1	1	0	0	0	0	copy fasta	PPP1R3C	chr10	91623442	91638071
PPP1R3D_chr20_59931663_59945305	1/0	t0001	2744	305	44	53	157	15	35	copy fasta	PPP1R3D	chr20	59931663	59945305
PPP1R3D_chr20_59931663_59945305	0/0	t0002	2745	20	14	4	0	0	2	copy fasta	PPP1R3D	chr20	59931663	59945305
PPP1R3D_chr20_59931663_59945305	0/0	t0003	2744	11	4	1	4	1	1	copy fasta	PPP1R3D	chr20	59931663	59945305
PPP1R3D_chr20_59931663_59945305	0/0	t0004	2742	9	9	0	0	0	0	copy fasta	PPP1R3D	chr20	59931663	59945305
PPP1R3D_chr20_59931663_59945305	0/0	t0005	2744	7	6	1	0	0	0	copy fasta	PPP1R3D	chr20	59931663	59945305
PPP1R3D_chr20_59931663_59945305	0/0	t0006	2743	5	5	0	0	0	0	copy fasta	PPP1R3D	chr20	59931663	59945305
PPP1R3D_chr20_59931663_59945305	0/0	t0007	2744	3	0	2	0	0	1	copy fasta	PPP1R3D	chr20	59931663	59945305
PPP1R3D_chr20_59931663_59945305	0/0	t0008	2744	2	0	2	0	0	0	copy fasta	PPP1R3D	chr20	59931663	59945305
PPP1R3D_chr20_59931663_59945305	0/0	t0009	2744	2	0	1	0	0	1	copy fasta	PPP1R3D	chr20	59931663	59945305
PPP1R3D_chr20_59931663_59945305	0/0	t0010	2744	2	0	0	2	0	0	copy fasta	PPP1R3D	chr20	59931663	59945305
PPP1R3D_chr20_59931663_59945305	0/0	t0011	2745	2	0	0	2	0	0	copy fasta	PPP1R3D	chr20	59931663	59945305
PPP1R3D_chr20_59931663_59945305	0/0	t0012	2743	2	2	0	0	0	0	copy fasta	PPP1R3D	chr20	59931663	59945305
PPP1R3D_chr20_59931663_59945305	0/1	t0013	2744	1	0	0	0	0	0	copy fasta	PPP1R3D	chr20	59931663	59945305
PPP1R3D_chr20_59931663_59945305	0/0	t0014	2744	1	1	0	0	0	0	copy fasta	PPP1R3D	chr20	59931663	59945305
PPP1R3D_chr20_59931663_59945305	0/0	t0015	2744	1	0	0	1	0	0	copy fasta	PPP1R3D	chr20	59931663	59945305
PPP1R3D_chr20_59931663_59945305	0/0	t0016	2744	1	0	1	0	0	0	copy fasta	PPP1R3D	chr20	59931663	59945305
PPP1R3D_chr20_59931663_59945305	0/0	t0017	2744	1	0	0	1	0	0	copy fasta	PPP1R3D	chr20	59931663	59945305
PPP1R3D_chr20_59931663_59945305	0/0	t0018	2745	1	0	0	0	0	1	copy fasta	PPP1R3D	chr20	59931663	59945305
PPP1R3D_chr20_59931663_59945305	0/0	t0019	2744	1	1	0	0	0	0	copy fasta	PPP1R3D	chr20	59931663	59945305
PPP1R3D_chr20_59931663_59945305	0/0	t0020	2743	1	0	0	0	0	1	copy fasta	PPP1R3D	chr20	59931663	59945305
PPP1R3D_chr20_59931663_59945305	0/0	t0021	2744	1	0	1	0	0	0	copy fasta	PPP1R3D	chr20	59931663	59945305
PPP1R3D_chr20_59931663_59945305	0/0	t0022	2744	1	0	0	1	0	0	copy fasta	PPP1R3D	chr20	59931663	59945305
PPP1R3D_chr20_59931663_59945305	0/0	t0023	2744	1	0	0	1	0	0	copy fasta	PPP1R3D	chr20	59931663	59945305
PPP1R3D_chr20_59931663_59945305	0/0	t0024	2744	1	0	0	1	0	0	copy fasta	PPP1R3D	chr20	59931663	59945305
PPP1R3E_chr14_23290652_23307859	1/0	t0001	3936	206	41	38	93	10	23	copy fasta	PPP1R3E	chr14	23290652	23307859
PPP1R3E_chr14_23290652_23307859	0/1	t0002	3936	132	1	26	88	6	10	copy fasta	PPP1R3E	chr14	23290652	23307859
PPP1R3E_chr14_23290652_23307859	0/0	t0003	3936	16	15	1	0	0	0	copy fasta	PPP1R3E	chr14	23290652	23307859
PPP1R3E_chr14_23290652_23307859	0/0	t0004	3936	8	0	0	8	0	0	copy fasta	PPP1R3E	chr14	23290652	23307859
PPP1R3E_chr14_23290652_23307859	0/0	t0005	3935	8	7	1	0	0	0	copy fasta	PPP1R3E	chr14	23290652	23307859
PPP1R3E_chr14_23290652_23307859	0/0	t0006	3936	7	7	0	0	0	0	copy fasta	PPP1R3E	chr14	23290652	23307859
PPP1R3E_chr14_23290652_23307859	0/0	t0007	3936	6	6	0	0	0	0	copy fasta	PPP1R3E	chr14	23290652	23307859
PPP1R3E_chr14_23290652_23307859	0/0	t0008	3936	4	0	0	4	0	0	copy fasta	PPP1R3E	chr14	23290652	23307859
PPP1R3E_chr14_23290652_23307859	0/0	t0009	3936	3	0	2	0	1	0	copy fasta	PPP1R3E	chr14	23290652	23307859
PPP1R3E_chr14_23290652_23307859	0/0	t0010	3936	2	2	0	0	0	0	copy fasta	PPP1R3E	chr14	23290652	23307859
PPP1R3E_chr14_23290652_23307859	0/0	t0011	3936	2	2	0	0	0	0	copy fasta	PPP1R3E	chr14	23290652	23307859
PPP1R3E_chr14_23290652_23307859	0/0	t0012	3936	2	0	0	2	0	0	copy fasta	PPP1R3E	chr14	23290652	23307859
PPP1R3E_chr14_23290652_23307859	0/0	t0013	3936	2	2	0	0	0	0	copy fasta	PPP1R3E	chr14	23290652	23307859
PPP1R3E_chr14_23290652_23307859	0/0	t0014	3936	2	0	0	2	0	0	copy fasta	PPP1R3E	chr14	23290652	23307859
PPP1R3E_chr14_23290652_23307859	0/0	t0015	3936	2	2	0	0	0	0	copy fasta	PPP1R3E	chr14	23290652	23307859
PPP1R3E_chr14_23290652_23307859	0/0	t0016	3936	2	2	0	0	0	0	copy fasta	PPP1R3E	chr14	23290652	23307859
PPP1R3E_chr14_23290652_23307859	0/0	t0017	3936	2	0	0	2	0	0	copy fasta	PPP1R3E	chr14	23290652	23307859
PPP1R3E_chr14_23290652_23307859	0/0	t0018	3936	2	1	1	0	0	0	copy fasta	PPP1R3E	chr14	23290652	23307859
PPP1R3E_chr14_23290652_23307859	0/0	t0019	3935	1	1	0	0	0	0	copy fasta	PPP1R3E	chr14	23290652	23307859
PPP1R3E_chr14_23290652_23307859	0/0	t0020	3936	1	0	0	0	0	1	copy fasta	PPP1R3E	chr14	23290652	23307859