JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPP1R3E_chr14_23290652_23307859	0/0	t0021	3936	1	1	0	0	0	0	copy fasta	PPP1R3E	chr14	23290652	23307859
PPP1R3E_chr14_23290652_23307859	0/0	t0022	3936	1	0	0	1	0	0	copy fasta	PPP1R3E	chr14	23290652	23307859
PPP1R3E_chr14_23290652_23307859	0/0	t0023	3936	1	0	0	1	0	0	copy fasta	PPP1R3E	chr14	23290652	23307859
PPP1R3E_chr14_23290652_23307859	0/0	t0024	3936	1	0	0	1	0	0	copy fasta	PPP1R3E	chr14	23290652	23307859
PPP1R3E_chr14_23290652_23307859	0/0	t0025	3936	1	0	1	0	0	0	copy fasta	PPP1R3E	chr14	23290652	23307859
PPP1R3E_chr14_23290652_23307859	0/0	t0026	3936	1	1	0	0	0	0	copy fasta	PPP1R3E	chr14	23290652	23307859
PPP1R3E_chr14_23290652_23307859	0/0	t0027	3936	1	0	1	0	0	0	copy fasta	PPP1R3E	chr14	23290652	23307859
PPP1R3E_chr14_23290652_23307859	0/0	t0028	3936	1	0	1	0	0	0	copy fasta	PPP1R3E	chr14	23290652	23307859
PPP1R3E_chr14_23290652_23307859	0/0	t0029	3936	1	1	0	0	0	0	copy fasta	PPP1R3E	chr14	23290652	23307859
PPP1R3E_chr14_23290652_23307859	0/0	t0030	3936	1	0	0	1	0	0	copy fasta	PPP1R3E	chr14	23290652	23307859
PPP1R3E_chr14_23290652_23307859	0/0	t0031	3936	1	1	0	0	0	0	copy fasta	PPP1R3E	chr14	23290652	23307859
PPP1R3E_chr14_23290652_23307859	0/0	t0032	3936	1	0	0	1	0	0	copy fasta	PPP1R3E	chr14	23290652	23307859
PPP1R3E_chr14_23290652_23307859	0/0	t0033	3936	1	0	0	0	1	0	copy fasta	PPP1R3E	chr14	23290652	23307859
PPP1R3E_chr14_23290652_23307859	0/0	t0034	3936	1	0	0	1	0	0	copy fasta	PPP1R3E	chr14	23290652	23307859
PPP1R3E_chr14_23290652_23307859	0/0	t0035	3936	1	1	0	0	0	0	copy fasta	PPP1R3E	chr14	23290652	23307859
PPP1R3E_chr14_23290652_23307859	0/0	t0036	3936	1	1	0	0	0	0	copy fasta	PPP1R3E	chr14	23290652	23307859
PPP1R3E_chr14_23290652_23307859	0/0	t0037	3936	1	0	0	1	0	0	copy fasta	PPP1R3E	chr14	23290652	23307859
PPP1R3E_chr14_23290652_23307859	0/0	t0038	3936	1	1	0	0	0	0	copy fasta	PPP1R3E	chr14	23290652	23307859
PPP1R3F_chrX_49264793_49293090	1/1	t0001	1078	240	44	46	109	11	28	copy fasta	PPP1R3F	chrX	49264793	49293090
PPP1R3F_chrX_49264793_49293090	0/0	t0002	1078	32	28	4	0	0	0	copy fasta	PPP1R3F	chrX	49264793	49293090
PPP1R3F_chrX_49264793_49293090	0/0	t0003	1075	6	0	0	6	0	0	copy fasta	PPP1R3F	chrX	49264793	49293090
PPP1R3F_chrX_49264793_49293090	0/0	t0004	1078	3	0	0	3	0	0	copy fasta	PPP1R3F	chrX	49264793	49293090
PPP1R3F_chrX_49264793_49293090	0/0	t0005	1079	1	0	0	1	0	0	copy fasta	PPP1R3F	chrX	49264793	49293090
PPP1R3F_chrX_49264793_49293090	0/0	t0006	1078	1	0	1	0	0	0	copy fasta	PPP1R3F	chrX	49264793	49293090
PPP1R3F_chrX_49264793_49293090	0/0	t0007	1078	1	1	0	0	0	0	copy fasta	PPP1R3F	chrX	49264793	49293090
PPP1R3F_chrX_49264793_49293090	0/0	t0008	1078	1	0	0	1	0	0	copy fasta	PPP1R3F	chrX	49264793	49293090
PPP1R3F_chrX_49264793_49293090	0/0	t0009	1078	1	0	1	0	0	0	copy fasta	PPP1R3F	chrX	49264793	49293090
PPP1R3F_chrX_49264793_49293090	0/0	t0010	1083	1	0	0	1	0	0	copy fasta	PPP1R3F	chrX	49264793	49293090
PPP1R3F_chrX_49264793_49293090	0/0	t0011	1084	1	0	0	1	0	0	copy fasta	PPP1R3F	chrX	49264793	49293090
PPP1R3G_chr6_5080341_5094487	0/1	t0001	3071	178	3	31	120	8	15	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	t0002	3071	35	13	3	12	0	7	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	t0003	3071	34	8	7	11	0	8	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	t0004	3071	19	0	15	0	2	2	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	t0005	3071	18	10	4	2	1	1	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	t0006	3071	18	12	0	2	0	4	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	t0007	3071	16	0	2	12	1	1	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	t0008	3065	10	10	0	0	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	t0009	3071	8	0	6	2	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	t0010	3071	7	7	0	0	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	t0011	3071	6	6	0	0	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	t0012	3071	5	0	1	1	1	2	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	t0013	3071	5	0	2	3	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	t0014	3071	5	0	1	3	0	1	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	t0015	3071	4	4	0	0	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	t0016	3071	4	3	1	0	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	t0017	3071	3	3	0	0	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	t0018	3071	3	2	1	0	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	t0019	3071	2	0	0	2	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	t0020	3071	2	2	0	0	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	t0021	3071	2	0	0	0	2	0	copy fasta	PPP1R3G	chr6	5080341	5094487