JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPP1R3G_chr6_5080341_5094487	0/0	t0022	3071	2	2	0	0	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	t0023	3071	2	0	0	1	0	1	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	t0024	3071	2	2	0	0	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	t0025	3071	2	2	0	0	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	t0026	3065	2	1	1	0	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	t0027	3071	1	1	0	0	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	t0028	3071	1	0	1	0	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	1/0	t0029	3071	1	0	0	0	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	t0030	3071	1	1	0	0	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	t0031	3071	1	1	0	0	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	t0032	3071	1	0	1	0	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	t0033	3071	1	0	0	1	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	t0034	3071	1	0	0	1	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	t0035	3071	1	0	0	0	1	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	t0036	3071	1	1	0	0	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	t0037	3071	1	0	0	1	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	t0038	3071	1	1	0	0	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	t0039	3071	1	0	0	1	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	t0040	3071	1	0	0	1	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	t0041	3071	1	0	0	1	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	t0042	3071	1	0	0	1	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	t0043	3071	1	0	1	0	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	t0044	3071	1	1	0	0	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	t0045	3065	1	1	0	0	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R3G_chr6_5080341_5094487	0/0	t0046	3071	1	1	0	0	0	0	copy fasta	PPP1R3G	chr6	5080341	5094487
PPP1R42_chr8_66959103_67033554	1/1	t0001	367	104	48	20	19	6	9	copy fasta	PPP1R42	chr8	66959103	67033554
PPP1R42_chr8_66959103_67033554	0/0	t0002	366	23	9	0	9	0	5	copy fasta	PPP1R42	chr8	66959103	67033554
PPP1R42_chr8_66959103_67033554	0/0	t0003	366	2	2	0	0	0	0	copy fasta	PPP1R42	chr8	66959103	67033554
PPP1R42_chr8_66959103_67033554	0/0	t0004	366	2	2	0	0	0	0	copy fasta	PPP1R42	chr8	66959103	67033554
PPP1R42_chr8_66959103_67033554	0/0	t0005	367	1	1	0	0	0	0	copy fasta	PPP1R42	chr8	66959103	67033554
PPP1R7_chr2_241145467_241188652	0/0	t0001	859	77	14	26	13	5	19	copy fasta	PPP1R7	chr2	241145467	241188652
PPP1R7_chr2_241145467_241188652	0/0	t0002	859	68	0	6	60	0	2	copy fasta	PPP1R7	chr2	241145467	241188652
PPP1R7_chr2_241145467_241188652	0/1	t0003	859	59	10	18	20	3	7	copy fasta	PPP1R7	chr2	241145467	241188652
PPP1R7_chr2_241145467_241188652	0/0	t0004	859	52	0	10	38	0	4	copy fasta	PPP1R7	chr2	241145467	241188652
PPP1R7_chr2_241145467_241188652	1/0	t0005	859	46	10	6	16	2	11	copy fasta	PPP1R7	chr2	241145467	241188652
PPP1R7_chr2_241145467_241188652	0/0	t0006	859	41	38	3	0	0	0	copy fasta	PPP1R7	chr2	241145467	241188652
PPP1R7_chr2_241145467_241188652	0/0	t0007	859	35	7	6	19	2	1	copy fasta	PPP1R7	chr2	241145467	241188652
PPP1R7_chr2_241145467_241188652	0/0	t0008	859	6	6	0	0	0	0	copy fasta	PPP1R7	chr2	241145467	241188652
PPP1R7_chr2_241145467_241188652	0/0	t0009	859	4	3	1	0	0	0	copy fasta	PPP1R7	chr2	241145467	241188652
PPP1R7_chr2_241145467_241188652	0/0	t0010	859	2	0	2	0	0	0	copy fasta	PPP1R7	chr2	241145467	241188652
PPP1R7_chr2_241145467_241188652	0/0	t0011	859	2	0	0	0	0	2	copy fasta	PPP1R7	chr2	241145467	241188652
PPP1R7_chr2_241145467_241188652	0/0	t0012	859	1	1	0	0	0	0	copy fasta	PPP1R7	chr2	241145467	241188652
PPP1R7_chr2_241145467_241188652	0/0	t0013	859	1	1	0	0	0	0	copy fasta	PPP1R7	chr2	241145467	241188652
PPP1R7_chr2_241145467_241188652	0/0	t0014	859	1	1	0	0	0	0	copy fasta	PPP1R7	chr2	241145467	241188652
PPP1R7_chr2_241145467_241188652	0/0	t0015	859	1	1	0	0	0	0	copy fasta	PPP1R7	chr2	241145467	241188652
PPP1R8_chr1_27825782_27856676	1/1	t0001	1285	310	68	63	132	12	33	copy fasta	PPP1R8	chr1	27825782	27856676
PPP1R8_chr1_27825782_27856676	0/0	t0002	1285	17	14	3	0	0	0	copy fasta	PPP1R8	chr1	27825782	27856676
PPP1R8_chr1_27825782_27856676	0/0	t0003	1285	5	3	1	0	0	1	copy fasta	PPP1R8	chr1	27825782	27856676
PPP1R8_chr1_27825782_27856676	0/0	t0004	1285	2	2	0	0	0	0	copy fasta	PPP1R8	chr1	27825782	27856676
PPP1R8_chr1_27825782_27856676	0/0	t0005	1285	2	0	0	0	0	2	copy fasta	PPP1R8	chr1	27825782	27856676