JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPP1R8_chr1_27825782_27856676	0/0	t0006	1285	1	1	0	0	0	0	copy fasta	PPP1R8	chr1	27825782	27856676
PPP1R8_chr1_27825782_27856676	0/0	t0007	1285	1	0	1	0	0	0	copy fasta	PPP1R8	chr1	27825782	27856676
PPP1R8_chr1_27825782_27856676	0/0	t0008	1285	1	1	0	0	0	0	copy fasta	PPP1R8	chr1	27825782	27856676
PPP1R8_chr1_27825782_27856676	0/0	t0009	1285	1	1	0	0	0	0	copy fasta	PPP1R8	chr1	27825782	27856676
PPP1R9A_chr7_94902594_95301400	0/0	t0001	6423	49	0	7	38	2	2	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	t0002	6423	44	14	9	18	0	3	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	1/1	t0003	6423	34	6	9	10	1	6	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	t0004	6423	32	5	6	20	0	1	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	t0005	6423	18	2	6	6	2	2	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	t0006	6423	11	8	3	0	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	t0007	6423	11	0	4	0	0	7	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	t0008	6423	6	5	1	0	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	t0009	6421	6	0	1	0	3	2	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	t0010	6423	5	5	0	0	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	t0011	6424	5	5	0	0	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	t0012	6423	4	4	0	0	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	t0013	6422	4	4	0	0	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	t0014	6423	4	0	0	4	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	t0015	6423	4	4	0	0	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	t0016	6423	3	3	0	0	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	t0017	6423	3	0	1	2	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	t0018	6424	3	1	0	2	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	t0019	6422	3	3	0	0	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	t0020	6423	2	2	0	0	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	t0021	6424	2	0	1	0	1	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	t0022	6423	2	1	0	1	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	t0023	6424	2	0	0	2	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	t0024	6423	2	2	0	0	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	t0025	6423	2	0	0	2	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	t0026	6423	2	0	0	2	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	t0027	6423	2	0	0	2	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	t0028	6423	1	0	0	1	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	t0029	6422	1	1	0	0	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	t0030	6423	1	0	1	0	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	t0031	6423	1	1	0	0	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	t0032	6423	1	0	0	0	1	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	t0033	6423	1	1	0	0	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	t0034	6423	1	1	0	0	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	t0035	6423	1	1	0	0	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	t0036	6423	1	0	0	1	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	t0037	6424	1	1	0	0	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	t0038	6423	1	0	0	1	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	t0039	6423	1	1	0	0	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	t0040	6423	1	1	0	0	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	t0041	6423	1	0	1	0	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	t0042	6423	1	0	0	0	0	1	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	t0043	6424	1	0	1	0	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	t0044	6422	1	0	0	0	0	1	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	t0045	6423	1	0	1	0	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	t0046	6423	1	0	0	1	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400