JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPP1R9A_chr7_94902594_95301400	0/0	t0047	6423	1	1	0	0	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	t0048	6423	1	0	0	0	0	1	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	t0049	6423	1	0	0	0	0	1	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	t0050	6423	1	0	0	0	0	1	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	t0051	6423	1	0	0	1	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9A_chr7_94902594_95301400	0/0	t0052	6423	1	1	0	0	0	0	copy fasta	PPP1R9A	chr7	94902594	95301400
PPP1R9B_chr17_50128737_50155677	0/1	t0001	1759	211	51	53	84	6	16	copy fasta	PPP1R9B	chr17	50128737	50155677
PPP1R9B_chr17_50128737_50155677	1/0	t0002	1759	143	23	21	61	8	29	copy fasta	PPP1R9B	chr17	50128737	50155677
PPP1R9B_chr17_50128737_50155677	0/0	t0003	1759	8	7	1	0	0	0	copy fasta	PPP1R9B	chr17	50128737	50155677
PPP1R9B_chr17_50128737_50155677	0/0	t0004	1759	6	5	1	0	0	0	copy fasta	PPP1R9B	chr17	50128737	50155677
PPP1R9B_chr17_50128737_50155677	0/0	t0005	1759	6	0	0	6	0	0	copy fasta	PPP1R9B	chr17	50128737	50155677
PPP1R9B_chr17_50128737_50155677	0/0	t0006	1759	4	2	2	0	0	0	copy fasta	PPP1R9B	chr17	50128737	50155677
PPP1R9B_chr17_50128737_50155677	0/0	t0007	1759	2	2	0	0	0	0	copy fasta	PPP1R9B	chr17	50128737	50155677
PPP1R9B_chr17_50128737_50155677	0/0	t0008	1759	2	2	0	0	0	0	copy fasta	PPP1R9B	chr17	50128737	50155677
PPP1R9B_chr17_50128737_50155677	0/0	t0009	1759	1	1	0	0	0	0	copy fasta	PPP1R9B	chr17	50128737	50155677
PPP1R9B_chr17_50128737_50155677	0/0	t0010	1759	1	0	0	1	0	0	copy fasta	PPP1R9B	chr17	50128737	50155677
PPP1R9B_chr17_50128737_50155677	0/0	t0011	1759	1	0	0	0	0	1	copy fasta	PPP1R9B	chr17	50128737	50155677
PPP1R9B_chr17_50128737_50155677	0/0	t0012	1759	1	1	0	0	0	0	copy fasta	PPP1R9B	chr17	50128737	50155677
PPP1R9B_chr17_50128737_50155677	0/0	t0013	1759	1	0	0	0	0	1	copy fasta	PPP1R9B	chr17	50128737	50155677
PPP1R9B_chr17_50128737_50155677	0/0	t0014	1759	1	1	0	0	0	0	copy fasta	PPP1R9B	chr17	50128737	50155677
PPP1R9B_chr17_50128737_50155677	0/0	t0015	1759	1	0	0	0	0	1	copy fasta	PPP1R9B	chr17	50128737	50155677
PPP1R9B_chr17_50128737_50155677	0/0	t0016	1759	1	1	0	0	0	0	copy fasta	PPP1R9B	chr17	50128737	50155677
PPP1R9B_chr17_50128737_50155677	0/0	t0017	1759	1	0	0	1	0	0	copy fasta	PPP1R9B	chr17	50128737	50155677
PPP1R9B_chr17_50128737_50155677	0/0	t0018	1759	1	0	0	1	0	0	copy fasta	PPP1R9B	chr17	50128737	50155677
PPP2CA_chr5_134189332_134231073	0/1	t0001	3653	167	43	22	76	5	20	copy fasta	PPP2CA	chr5	134189332	134231073
PPP2CA_chr5_134189332_134231073	1/0	t0002	3653	98	7	13	64	2	11	copy fasta	PPP2CA	chr5	134189332	134231073
PPP2CA_chr5_134189332_134231073	0/0	t0003	3653	49	9	18	13	4	5	copy fasta	PPP2CA	chr5	134189332	134231073
PPP2CA_chr5_134189332_134231073	0/0	t0004	3653	8	0	0	8	0	0	copy fasta	PPP2CA	chr5	134189332	134231073
PPP2CA_chr5_134189332_134231073	0/0	t0005	3653	5	4	1	0	0	0	copy fasta	PPP2CA	chr5	134189332	134231073
PPP2CA_chr5_134189332_134231073	0/0	t0006	3653	5	4	1	0	0	0	copy fasta	PPP2CA	chr5	134189332	134231073
PPP2CA_chr5_134189332_134231073	0/0	t0007	3653	4	3	1	0	0	0	copy fasta	PPP2CA	chr5	134189332	134231073
PPP2CA_chr5_134189332_134231073	0/0	t0008	3653	3	3	0	0	0	0	copy fasta	PPP2CA	chr5	134189332	134231073
PPP2CA_chr5_134189332_134231073	0/0	t0009	3653	3	3	0	0	0	0	copy fasta	PPP2CA	chr5	134189332	134231073
PPP2CA_chr5_134189332_134231073	0/0	t0010	3653	2	2	0	0	0	0	copy fasta	PPP2CA	chr5	134189332	134231073
PPP2CA_chr5_134189332_134231073	0/0	t0011	3653	2	1	1	0	0	0	copy fasta	PPP2CA	chr5	134189332	134231073
PPP2CA_chr5_134189332_134231073	0/0	t0012	3653	1	0	0	0	0	1	copy fasta	PPP2CA	chr5	134189332	134231073
PPP2CA_chr5_134189332_134231073	0/0	t0013	3653	1	1	0	0	0	0	copy fasta	PPP2CA	chr5	134189332	134231073
PPP2CA_chr5_134189332_134231073	0/0	t0014	3653	1	1	0	0	0	0	copy fasta	PPP2CA	chr5	134189332	134231073
PPP2CA_chr5_134189332_134231073	0/0	t0015	3653	1	1	0	0	0	0	copy fasta	PPP2CA	chr5	134189332	134231073
PPP2CA_chr5_134189332_134231073	0/0	t0016	3653	1	0	0	1	0	0	copy fasta	PPP2CA	chr5	134189332	134231073
PPP2CA_chr5_134189332_134231073	0/0	t0017	3653	1	1	0	0	0	0	copy fasta	PPP2CA	chr5	134189332	134231073
PPP2CA_chr5_134189332_134231073	0/0	t0018	3653	1	0	0	0	1	0	copy fasta	PPP2CA	chr5	134189332	134231073
PPP2CA_chr5_134189332_134231073	0/0	t0019	3653	1	0	1	0	0	0	copy fasta	PPP2CA	chr5	134189332	134231073
PPP2CA_chr5_134189332_134231073	0/0	t0020	3653	1	0	0	1	0	0	copy fasta	PPP2CA	chr5	134189332	134231073
PPP2CA_chr5_134189332_134231073	0/0	t0021	3653	1	1	0	0	0	0	copy fasta	PPP2CA	chr5	134189332	134231073
PPP2CA_chr5_134189332_134231073	0/0	t0022	3653	1	0	1	0	0	0	copy fasta	PPP2CA	chr5	134189332	134231073
PPP2CA_chr5_134189332_134231073	0/0	t0023	3653	1	0	0	0	0	1	copy fasta	PPP2CA	chr5	134189332	134231073
PPP2CA_chr5_134189332_134231073	0/0	t0024	3653	1	1	0	0	0	0	copy fasta	PPP2CA	chr5	134189332	134231073
PPP2CA_chr5_134189332_134231073	0/0	t0025	3653	1	0	0	1	0	0	copy fasta	PPP2CA	chr5	134189332	134231073
PPP2CA_chr5_134189332_134231073	0/0	t0026	3653	1	0	0	1	0	0	copy fasta	PPP2CA	chr5	134189332	134231073