JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPP2CA_chr5_134189332_134231073	0/0	t0027	3653	1	0	0	1	0	0	copy fasta	PPP2CA	chr5	134189332	134231073
PPP2CA_chr5_134189332_134231073	0/0	t0028	3653	1	0	1	0	0	0	copy fasta	PPP2CA	chr5	134189332	134231073
PPP2CA_chr5_134189332_134231073	0/0	t0029	3653	1	1	0	0	0	0	copy fasta	PPP2CA	chr5	134189332	134231073
PPP2CB_chr8_30780616_30817818	1/1	t0001	1017	125	7	23	70	8	15	copy fasta	PPP2CB	chr8	30780616	30817818
PPP2CB_chr8_30780616_30817818	0/0	t0002	1017	106	52	21	22	0	11	copy fasta	PPP2CB	chr8	30780616	30817818
PPP2CB_chr8_30780616_30817818	0/0	t0003	1021	55	15	9	20	2	9	copy fasta	PPP2CB	chr8	30780616	30817818
PPP2CB_chr8_30780616_30817818	0/0	t0004	1017	6	6	0	0	0	0	copy fasta	PPP2CB	chr8	30780616	30817818
PPP2CB_chr8_30780616_30817818	0/0	t0005	1017	3	3	0	0	0	0	copy fasta	PPP2CB	chr8	30780616	30817818
PPP2CB_chr8_30780616_30817818	0/0	t0006	1021	2	2	0	0	0	0	copy fasta	PPP2CB	chr8	30780616	30817818
PPP2CB_chr8_30780616_30817818	0/0	t0007	1017	2	2	0	0	0	0	copy fasta	PPP2CB	chr8	30780616	30817818
PPP2CB_chr8_30780616_30817818	0/0	t0008	1017	2	1	1	0	0	0	copy fasta	PPP2CB	chr8	30780616	30817818
PPP2CB_chr8_30780616_30817818	0/0	t0009	1017	1	1	0	0	0	0	copy fasta	PPP2CB	chr8	30780616	30817818
PPP2CB_chr8_30780616_30817818	0/0	t0010	1021	1	1	0	0	0	0	copy fasta	PPP2CB	chr8	30780616	30817818
PPP2CB_chr8_30780616_30817818	0/0	t0011	1017	1	0	0	0	0	1	copy fasta	PPP2CB	chr8	30780616	30817818
PPP2R1A_chr19_52185052_52234518	0/1	t0001	3583	190	41	33	75	13	27	copy fasta	PPP2R1A	chr19	52185052	52234518
PPP2R1A_chr19_52185052_52234518	1/0	t0002	3583	52	0	18	28	0	5	copy fasta	PPP2R1A	chr19	52185052	52234518
PPP2R1A_chr19_52185052_52234518	0/0	t0003	3582	40	7	3	24	2	4	copy fasta	PPP2R1A	chr19	52185052	52234518
PPP2R1A_chr19_52185052_52234518	0/0	t0004	3582	30	12	14	1	0	3	copy fasta	PPP2R1A	chr19	52185052	52234518
PPP2R1A_chr19_52185052_52234518	0/0	t0005	3582	22	5	3	12	0	2	copy fasta	PPP2R1A	chr19	52185052	52234518
PPP2R1A_chr19_52185052_52234518	0/0	t0006	3582	10	7	1	0	0	2	copy fasta	PPP2R1A	chr19	52185052	52234518
PPP2R1A_chr19_52185052_52234518	0/0	t0007	3582	7	6	1	0	0	0	copy fasta	PPP2R1A	chr19	52185052	52234518
PPP2R1A_chr19_52185052_52234518	0/0	t0008	3582	5	0	2	0	1	2	copy fasta	PPP2R1A	chr19	52185052	52234518
PPP2R1A_chr19_52185052_52234518	0/0	t0009	3582	3	0	0	3	0	0	copy fasta	PPP2R1A	chr19	52185052	52234518
PPP2R1A_chr19_52185052_52234518	0/0	t0010	3582	3	0	0	3	0	0	copy fasta	PPP2R1A	chr19	52185052	52234518
PPP2R1A_chr19_52185052_52234518	0/0	t0011	3583	2	2	0	0	0	0	copy fasta	PPP2R1A	chr19	52185052	52234518
PPP2R1A_chr19_52185052_52234518	0/0	t0012	3582	2	2	0	0	0	0	copy fasta	PPP2R1A	chr19	52185052	52234518
PPP2R1A_chr19_52185052_52234518	0/0	t0013	3583	2	0	0	2	0	0	copy fasta	PPP2R1A	chr19	52185052	52234518
PPP2R1A_chr19_52185052_52234518	0/0	t0014	3583	2	0	0	2	0	0	copy fasta	PPP2R1A	chr19	52185052	52234518
PPP2R1A_chr19_52185052_52234518	0/0	t0015	3582	1	1	0	0	0	0	copy fasta	PPP2R1A	chr19	52185052	52234518
PPP2R1A_chr19_52185052_52234518	0/0	t0016	3582	1	0	0	0	0	1	copy fasta	PPP2R1A	chr19	52185052	52234518
PPP2R1A_chr19_52185052_52234518	0/0	t0017	3582	1	1	0	0	0	0	copy fasta	PPP2R1A	chr19	52185052	52234518
PPP2R1A_chr19_52185052_52234518	0/0	t0018	3582	1	1	0	0	0	0	copy fasta	PPP2R1A	chr19	52185052	52234518
PPP2R1A_chr19_52185052_52234518	0/0	t0019	3582	1	0	0	1	0	0	copy fasta	PPP2R1A	chr19	52185052	52234518
PPP2R1A_chr19_52185052_52234518	0/0	t0020	3582	1	1	0	0	0	0	copy fasta	PPP2R1A	chr19	52185052	52234518
PPP2R1A_chr19_52185052_52234518	0/0	t0021	3582	1	1	0	0	0	0	copy fasta	PPP2R1A	chr19	52185052	52234518
PPP2R1A_chr19_52185052_52234518	0/0	t0022	3583	1	0	0	1	0	0	copy fasta	PPP2R1A	chr19	52185052	52234518
PPP2R1A_chr19_52185052_52234518	0/0	t0023	3583	1	0	1	0	0	0	copy fasta	PPP2R1A	chr19	52185052	52234518
PPP2R1A_chr19_52185052_52234518	0/0	t0024	3583	1	1	0	0	0	0	copy fasta	PPP2R1A	chr19	52185052	52234518
PPP2R1A_chr19_52185052_52234518	0/0	t0025	3583	1	0	0	0	0	1	copy fasta	PPP2R1A	chr19	52185052	52234518
PPP2R1A_chr19_52185052_52234518	0/0	t0026	3583	1	0	0	0	0	1	copy fasta	PPP2R1A	chr19	52185052	52234518
PPP2R1A_chr19_52185052_52234518	0/0	t0027	3582	1	1	0	0	0	0	copy fasta	PPP2R1A	chr19	52185052	52234518
PPP2R1A_chr19_52185052_52234518	0/0	t0028	3582	1	1	0	0	0	0	copy fasta	PPP2R1A	chr19	52185052	52234518
PPP2R1B_chr11_111732877_111771389	0/0	t0001	3747	44	1	8	26	0	9	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0002	3752	26	1	6	15	1	3	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0003	3750	22	2	6	5	1	8	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0004	3753	21	9	6	4	0	2	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0005	3749	20	3	3	12	1	1	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0006	3745	17	1	3	13	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0007	3755	17	2	4	7	3	1	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0008	3750	14	10	4	0	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389