JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPP2R1B_chr11_111732877_111771389	0/0	t0009	3743	13	0	4	8	0	1	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0010	3754	10	3	1	4	1	1	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0011	3749	10	3	1	4	2	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0012	3753	9	1	3	2	0	3	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0013	3748	8	0	3	2	0	3	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0014	3742	7	7	0	0	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0015	3740	7	0	6	0	0	1	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0016	3746	7	7	0	0	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/1	t0017	3746	6	0	2	1	0	2	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	1/0	t0018	3748	6	4	0	1	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0019	3751	5	2	0	2	0	1	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0020	3744	5	5	0	0	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0021	3743	5	0	5	0	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0022	3751	5	1	0	4	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0023	3752	4	4	0	0	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0024	3754	4	2	1	1	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0025	3757	4	0	0	3	0	1	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0026	3740	4	3	1	0	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0027	3754	3	0	0	3	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0028	3756	3	0	0	3	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0029	3745	3	0	0	3	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0030	3746	2	2	0	0	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0031	3752	2	0	0	2	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0032	3741	2	0	1	1	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0033	3742	2	2	0	0	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0034	3744	2	0	0	2	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0035	3748	2	0	0	2	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0036	3750	2	0	2	0	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0037	3747	2	1	0	1	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0038	3754	2	0	0	1	0	1	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0039	3747	2	0	2	0	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0040	3744	1	1	0	0	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0041	3749	1	0	1	0	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0042	3749	1	1	0	0	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0043	3753	1	1	0	0	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0044	3748	1	1	0	0	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0045	3758	1	1	0	0	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0046	3754	1	0	0	1	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0047	3750	1	1	0	0	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0048	3746	1	1	0	0	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0049	3745	1	0	0	1	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0050	3745	1	0	0	1	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0051	3747	1	0	0	1	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0052	3755	1	0	0	1	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0053	3747	1	0	1	0	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0054	3742	1	0	1	0	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0055	3744	1	1	0	0	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0056	3750	1	0	0	1	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0057	3750	1	0	1	0	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0058	3753	1	0	0	1	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389