JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPP2R1B_chr11_111732877_111771389	0/0	t0059	3756	1	0	0	1	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0060	3748	1	1	0	0	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0061	3737	1	0	1	0	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0062	3753	1	1	0	0	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0063	3757	1	1	0	0	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0064	3759	1	0	0	0	1	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0065	3753	1	0	1	0	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0066	3744	1	1	0	0	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0067	3744	1	1	0	0	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R1B_chr11_111732877_111771389	0/0	t0068	3749	1	1	0	0	0	0	copy fasta	PPP2R1B	chr11	111732877	111771389
PPP2R2A_chr8_26286508_26377680	1/1	t0001	2580	154	50	33	51	4	14	copy fasta	PPP2R2A	chr8	26286508	26377680
PPP2R2A_chr8_26286508_26377680	0/0	t0002	2579	60	11	5	43	0	1	copy fasta	PPP2R2A	chr8	26286508	26377680
PPP2R2A_chr8_26286508_26377680	0/0	t0003	2582	41	2	9	23	4	3	copy fasta	PPP2R2A	chr8	26286508	26377680
PPP2R2A_chr8_26286508_26377680	0/0	t0004	2581	18	7	1	7	0	3	copy fasta	PPP2R2A	chr8	26286508	26377680
PPP2R2A_chr8_26286508_26377680	0/0	t0005	2583	15	0	3	3	0	9	copy fasta	PPP2R2A	chr8	26286508	26377680
PPP2R2A_chr8_26286508_26377680	0/0	t0006	2580	10	4	3	3	0	0	copy fasta	PPP2R2A	chr8	26286508	26377680
PPP2R2A_chr8_26286508_26377680	0/0	t0007	2576	9	9	0	0	0	0	copy fasta	PPP2R2A	chr8	26286508	26377680
PPP2R2A_chr8_26286508_26377680	0/0	t0008	2579	6	0	2	0	0	4	copy fasta	PPP2R2A	chr8	26286508	26377680
PPP2R2A_chr8_26286508_26377680	0/0	t0009	2578	6	0	5	1	0	0	copy fasta	PPP2R2A	chr8	26286508	26377680
PPP2R2A_chr8_26286508_26377680	0/0	t0010	2580	4	0	0	4	0	0	copy fasta	PPP2R2A	chr8	26286508	26377680
PPP2R2A_chr8_26286508_26377680	0/0	t0011	2578	3	0	1	0	1	1	copy fasta	PPP2R2A	chr8	26286508	26377680
PPP2R2A_chr8_26286508_26377680	0/0	t0012	2580	2	0	2	0	0	0	copy fasta	PPP2R2A	chr8	26286508	26377680
PPP2R2A_chr8_26286508_26377680	0/0	t0013	2580	2	0	1	0	0	1	copy fasta	PPP2R2A	chr8	26286508	26377680
PPP2R2A_chr8_26286508_26377680	0/0	t0014	2581	2	0	0	0	1	1	copy fasta	PPP2R2A	chr8	26286508	26377680
PPP2R2A_chr8_26286508_26377680	0/0	t0015	2582	1	0	1	0	0	0	copy fasta	PPP2R2A	chr8	26286508	26377680
PPP2R2A_chr8_26286508_26377680	0/0	t0016	2579	1	1	0	0	0	0	copy fasta	PPP2R2A	chr8	26286508	26377680
PPP2R2A_chr8_26286508_26377680	0/0	t0017	2579	1	1	0	0	0	0	copy fasta	PPP2R2A	chr8	26286508	26377680
PPP2R2A_chr8_26286508_26377680	0/0	t0018	2580	1	0	1	0	0	0	copy fasta	PPP2R2A	chr8	26286508	26377680
PPP2R2A_chr8_26286508_26377680	0/0	t0019	2580	1	1	0	0	0	0	copy fasta	PPP2R2A	chr8	26286508	26377680
PPP2R2A_chr8_26286508_26377680	0/0	t0020	2580	1	0	0	0	0	1	copy fasta	PPP2R2A	chr8	26286508	26377680
PPP2R2A_chr8_26286508_26377680	0/0	t0021	2583	1	0	1	0	0	0	copy fasta	PPP2R2A	chr8	26286508	26377680
PPP2R2A_chr8_26286508_26377680	0/0	t0022	2580	1	0	0	1	0	0	copy fasta	PPP2R2A	chr8	26286508	26377680
PPP2R2B_chr5_146575742_146883757	0/0	t0001	9506	9	1	3	4	0	1	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0002	9517	7	0	2	4	0	1	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0003	9508	7	0	1	6	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0004	9515	5	3	1	1	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0005	9499	5	1	2	2	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0006	9503	5	4	0	0	0	1	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0007	9521	4	2	0	2	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0008	9516	4	4	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0009	9504	4	0	0	4	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/1	t0010	9513	3	0	2	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0011	9509	3	3	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0012	9512	3	0	2	1	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0013	9499	3	3	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0014	9500	3	3	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0015	9519	2	1	0	1	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0016	9511	2	0	1	1	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0017	9510	2	0	0	2	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0018	9512	2	2	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757