Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATP4A_chr19_35545031_35568658	0/0	t0005	614	1	0	0	0	0	1	copy fasta	ATP4A	chr19	35545031	35568658
ATP4B_chr13_113643804_113663198	1/1	t0001	625	419	78	79	201	13	46	copy fasta	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	t0002	627	31	17	8	3	3	0	copy fasta	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	t0003	625	1	0	0	1	0	0	copy fasta	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	t0004	625	1	0	0	0	0	1	copy fasta	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	t0005	625	1	1	0	0	0	0	copy fasta	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	t0006	625	1	0	1	0	0	0	copy fasta	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	t0007	625	1	0	0	1	0	0	copy fasta	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	t0008	625	1	0	0	0	0	1	copy fasta	ATP4B	chr13	113643804	113663198
ATP5F1A_chr18_46075248_46103296	1/0	t0001	4100	60	12	4	36	2	5	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0002	4089	45	0	3	41	0	1	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0003	4096	23	4	6	5	3	5	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/1	t0004	4100	21	2	6	8	0	4	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0005	4101	13	3	3	7	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0006	4097	13	13	0	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0007	4100	9	3	4	0	0	2	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0008	4088	9	4	4	0	0	1	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0009	4090	8	0	1	7	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0010	4085	6	1	1	4	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0011	4099	5	2	0	2	0	1	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0012	4100	5	0	0	5	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0013	4087	5	0	4	0	1	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0014	4096	5	0	2	1	1	1	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0015	4096	5	4	1	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0016	4101	4	1	0	3	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0017	4097	4	0	0	0	2	2	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0018	4094	4	4	0	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0019	4090	4	0	0	4	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0020	4087	3	3	0	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0021	4088	3	0	0	3	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0022	4090	3	0	0	3	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0023	4090	3	0	1	2	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0024	4091	3	3	0	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0025	4101	2	0	0	2	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0026	4101	2	0	0	0	0	2	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0027	4101	2	0	0	0	1	1	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0028	4088	2	0	0	2	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0029	4088	2	2	0	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0030	4089	2	0	0	2	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0031	4090	2	0	2	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0032	4084	2	0	1	1	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0033	4093	2	2	0	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0034	4095	2	0	1	1	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0035	4092	2	0	0	0	0	2	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0036	4096	2	0	0	0	0	2	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0037	4096	2	0	0	0	1	1	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0038	4096	2	2	0	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0039	4096	2	2	0	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0040	4096	2	0	1	0	1	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0041	4101	1	0	0	1	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296