JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPP2R2B_chr5_146575742_146883757	0/0	t0019	9502	2	0	0	2	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0020	9506	2	0	0	2	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0021	9508	2	1	0	0	1	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0022	9501	2	2	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0023	9508	2	2	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0024	9530	1	0	1	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0025	9526	1	1	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0026	9530	1	0	0	1	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0027	9530	1	0	0	1	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0028	9523	1	0	0	1	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0029	9525	1	1	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0030	9519	1	0	0	0	0	1	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0031	9533	1	0	0	1	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0032	9518	1	0	0	1	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0033	9520	1	0	0	1	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0034	9524	1	0	0	1	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0035	9528	1	0	0	1	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0036	9534	1	0	0	1	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0037	9526	1	0	1	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0038	9525	1	0	1	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0039	9517	1	0	0	1	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0040	9521	1	0	0	0	0	1	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0041	9523	1	1	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0042	9523	1	1	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0043	9525	1	1	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0044	9531	1	0	0	1	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0045	9518	1	1	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0046	9520	1	1	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0047	9520	1	1	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0048	9516	1	1	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0049	9518	1	0	0	1	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0050	9520	1	1	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0051	9513	1	1	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0052	9514	1	0	1	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0053	9518	1	1	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0054	9518	1	1	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0055	9519	1	1	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0056	9515	1	1	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0057	9517	1	1	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0058	9515	1	0	1	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0059	9523	1	1	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0060	9513	1	0	1	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0061	9512	1	0	0	1	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0062	9497	1	0	0	1	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0063	9515	1	0	1	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0064	9513	1	0	0	1	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0065	9515	1	0	1	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0066	9507	1	1	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0067	9515	1	0	0	0	0	1	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0068	9510	1	0	1	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757