JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPP2R2B_chr5_146575742_146883757	0/0	t0069	9508	1	0	0	1	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0070	9506	1	0	0	1	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0071	9512	1	0	0	1	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0072	9510	1	1	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0073	9528	1	1	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0074	9499	1	1	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0075	9513	1	0	0	1	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0076	9512	1	1	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0077	9514	1	1	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0078	9498	1	1	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0079	9500	1	0	0	0	1	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0080	9506	1	1	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0081	9508	1	0	0	1	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0082	9510	1	0	0	0	0	1	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0083	9500	1	1	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0084	9512	1	1	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0085	9501	1	0	1	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0086	9503	1	1	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0087	9507	1	1	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	1/0	t0088	9497	1	0	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0089	9501	1	0	1	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0090	9505	1	0	1	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0091	9503	1	1	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0092	9505	1	1	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0093	9505	1	1	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0094	9506	1	0	0	0	0	1	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0095	9511	1	0	1	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0096	9511	1	1	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0097	9498	1	0	1	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0098	9505	1	1	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0099	9503	1	1	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0100	9500	1	1	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0101	9504	1	1	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0102	9500	1	1	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0103	9500	1	1	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0104	9502	1	1	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0105	9509	1	1	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0106	9497	1	0	1	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0107	9501	1	0	1	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0108	9497	1	1	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0109	9502	1	1	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2B_chr5_146575742_146883757	0/0	t0110	9494	1	1	0	0	0	0	copy fasta	PPP2R2B	chr5	146575742	146883757
PPP2R2C_chr4_6315581_6477614	0/1	t0001	3086	68	2	19	25	7	14	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	t0002	3086	65	32	13	15	0	5	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	1/0	t0003	3107	31	9	12	1	4	4	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	t0004	3086	21	0	1	19	0	1	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	t0005	3107	11	5	2	3	0	1	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	t0006	3085	8	0	1	6	0	1	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	t0007	3086	7	0	0	5	0	2	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	t0008	3108	6	6	0	0	0	0	copy fasta	PPP2R2C	chr4	6315581	6477614