JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPP2R2C_chr4_6315581_6477614	0/0	t0009	3086	5	5	0	0	0	0	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	t0010	3107	5	5	0	0	0	0	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	t0011	3106	5	4	1	0	0	0	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	t0012	3102	4	4	0	0	0	0	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	t0013	3105	4	3	1	0	0	0	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	t0014	3086	4	0	1	2	1	0	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	t0015	3107	4	0	0	4	0	0	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	t0016	3086	3	3	0	0	0	0	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	t0017	3086	2	0	1	0	0	1	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	t0018	3086	2	0	2	0	0	0	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	t0019	3086	2	2	0	0	0	0	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	t0020	3107	2	0	0	0	0	2	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	t0021	3105	2	2	0	0	0	0	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	t0022	3107	2	0	0	2	0	0	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	t0023	3107	2	2	0	0	0	0	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	t0024	3107	2	0	0	0	0	2	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	t0025	3086	2	0	0	2	0	0	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	t0026	3107	2	0	2	0	0	0	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	t0027	3085	2	0	1	1	0	0	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	t0028	3107	2	0	0	0	0	2	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	t0029	3086	1	0	1	0	0	0	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	t0030	3086	1	0	0	1	0	0	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	t0031	3107	1	1	0	0	0	0	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	t0032	3086	1	0	1	0	0	0	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	t0033	3086	1	0	0	1	0	0	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	t0034	3086	1	0	0	1	0	0	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	t0035	3086	1	0	0	0	0	1	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	t0036	3107	1	1	0	0	0	0	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	t0037	3107	1	1	0	0	0	0	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	t0038	3085	1	1	0	0	0	0	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	t0039	3107	1	1	0	0	0	0	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	t0040	3107	1	0	1	0	0	0	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	t0041	3107	1	1	0	0	0	0	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	t0042	3105	1	1	0	0	0	0	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	t0043	3107	1	1	0	0	0	0	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	t0044	3085	1	1	0	0	0	0	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	t0045	3086	1	0	0	1	0	0	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	t0046	3086	1	0	0	0	0	1	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	t0047	3105	1	1	0	0	0	0	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	t0048	3107	1	0	1	0	0	0	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	t0049	3107	1	0	0	1	0	0	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	t0050	3107	1	0	0	0	0	1	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2C_chr4_6315581_6477614	0/0	t0051	3086	1	0	1	0	0	0	copy fasta	PPP2R2C	chr4	6315581	6477614
PPP2R2D_chr10_131896008_131964834	0/0	t0001	4010	74	11	10	38	4	11	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	1/0	t0002	4013	60	8	12	34	3	2	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0003	4247	20	2	0	16	0	2	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/1	t0004	4272	18	6	6	2	2	1	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0005	3976	18	2	5	7	0	4	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0006	4235	16	2	0	14	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0007	3973	13	2	5	5	1	0	copy fasta	PPP2R2D	chr10	131896008	131964834