JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPP2R2D_chr10_131896008_131964834	0/0	t0058	4010	1	0	0	1	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0059	4010	1	1	0	0	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0060	2972	1	1	0	0	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0061	4010	1	1	0	0	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0062	4010	1	0	0	0	0	1	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0063	4010	1	0	0	1	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0064	4010	1	1	0	0	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0065	4198	1	0	0	1	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0066	4235	1	1	0	0	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0067	4309	1	1	0	0	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0068	4235	1	0	0	1	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0069	4272	1	1	0	0	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0070	5409	1	0	0	1	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0071	4272	1	1	0	0	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0072	4272	1	0	1	0	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0073	3754	1	1	0	0	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0074	4013	1	0	0	1	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0075	4013	1	0	0	0	0	1	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0076	4013	1	0	0	1	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0077	3828	1	0	1	0	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0078	4013	1	0	0	1	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0079	4013	1	0	0	1	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0080	4013	1	1	0	0	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0081	4013	1	1	0	0	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0082	3976	1	0	0	1	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0083	4272	1	1	0	0	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0084	4386	1	0	0	1	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0085	4238	1	0	0	0	0	1	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0086	4275	1	1	0	0	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0087	4275	1	0	0	0	0	1	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0088	3979	1	0	1	0	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0089	4247	1	0	0	1	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0090	4247	1	0	0	1	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0091	4395	1	0	0	1	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0092	4210	1	0	0	0	1	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0093	4247	1	0	0	0	0	1	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0094	4136	1	0	0	0	0	1	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0095	4250	1	0	0	1	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0096	4271	1	0	0	0	0	1	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0097	4179	1	0	1	0	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0098	4253	1	0	0	1	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0099	4290	1	0	1	0	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0100	4220	1	0	1	0	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0101	4256	1	0	0	1	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0102	4293	1	1	0	0	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0103	4222	1	0	0	1	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0104	4262	1	0	0	1	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0105	4265	1	0	0	1	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0106	4265	1	0	0	0	0	1	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0107	4268	1	0	0	1	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834