JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPP2R2D_chr10_131896008_131964834	0/0	t0108	4305	1	1	0	0	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0109	4286	1	0	0	1	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0110	4271	1	0	1	0	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0111	4271	1	0	1	0	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0112	4295	1	0	0	1	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R2D_chr10_131896008_131964834	0/0	t0113	4211	1	0	1	0	0	0	copy fasta	PPP2R2D	chr10	131896008	131964834
PPP2R3A_chr3_135960728_136152894	1/0	t0001	3291	103	15	34	24	6	23	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/1	t0002	3291	75	20	15	24	4	11	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	t0003	3291	13	12	1	0	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	t0004	3288	7	7	0	0	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	t0005	3291	4	4	0	0	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	t0006	3292	4	2	0	1	0	1	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	t0007	3291	3	3	0	0	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	t0008	3292	3	2	1	0	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	t0009	3292	3	2	1	0	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	t0010	3291	2	2	0	0	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	t0011	3291	2	2	0	0	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	t0012	3291	2	0	1	0	0	1	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	t0013	3290	2	2	0	0	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	t0014	3292	1	0	1	0	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	t0015	3291	1	1	0	0	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	t0016	3291	1	1	0	0	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	t0017	3291	1	0	0	1	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	t0018	3291	1	0	0	1	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	t0019	3291	1	0	0	1	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	t0020	3288	1	1	0	0	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	t0021	3291	1	1	0	0	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	t0022	3291	1	1	0	0	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	t0023	3291	1	0	0	1	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	t0024	3291	1	0	0	1	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	t0025	3290	1	1	0	0	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	t0026	3291	1	1	0	0	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	t0027	3291	1	1	0	0	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3A_chr3_135960728_136152894	0/0	t0028	3287	1	1	0	0	0	0	copy fasta	PPP2R3A	chr3	135960728	136152894
PPP2R3B_chrX_328933_391907	0/1	t0001	651	7	1	0	1	1	3	copy fasta	PPP2R3B	chrX	328933	391907
PPP2R3B_chrX_328933_391907	0/0	t0002	651	5	0	1	3	0	1	copy fasta	PPP2R3B	chrX	328933	391907
PPP2R3B_chrX_328933_391907	0/0	t0003	651	3	1	1	1	0	0	copy fasta	PPP2R3B	chrX	328933	391907
PPP2R3B_chrX_328933_391907	0/0	t0004	651	1	0	0	1	0	0	copy fasta	PPP2R3B	chrX	328933	391907
PPP2R3B_chrX_328933_391907	0/0	t0005	651	1	1	0	0	0	0	copy fasta	PPP2R3B	chrX	328933	391907
PPP2R3B_chrX_328933_391907	0/0	t0006	651	1	1	0	0	0	0	copy fasta	PPP2R3B	chrX	328933	391907
PPP2R3B_chrX_328933_391907	0/0	t0007	654	1	0	0	0	0	1	copy fasta	PPP2R3B	chrX	328933	391907
PPP2R3B_chrX_328933_391907	0/0	t0008	651	1	0	0	1	0	0	copy fasta	PPP2R3B	chrX	328933	391907
PPP2R3B_chrX_328933_391907	0/0	t0009	652	1	0	1	0	0	0	copy fasta	PPP2R3B	chrX	328933	391907
PPP2R3B_chrX_328933_391907	0/0	t0010	651	1	1	0	0	0	0	copy fasta	PPP2R3B	chrX	328933	391907
PPP2R3B_chrX_328933_391907	0/0	t0011	650	1	0	0	1	0	0	copy fasta	PPP2R3B	chrX	328933	391907
PPP2R3B_chrX_328933_391907	0/0	t0012	651	1	0	1	0	0	0	copy fasta	PPP2R3B	chrX	328933	391907
PPP2R3B_chrX_328933_391907	0/0	t0013	652	1	0	0	1	0	0	copy fasta	PPP2R3B	chrX	328933	391907
PPP2R3C_chr14_35080472_35126990	1/0	t0001	150	204	41	48	86	7	21	copy fasta	PPP2R3C	chr14	35080472	35126990
PPP2R3C_chr14_35080472_35126990	0/1	t0002	150	174	53	28	70	5	17	copy fasta	PPP2R3C	chr14	35080472	35126990
PPP2R5A_chr1_212280410_212366853	1/0	t0001	1785	156	31	34	62	5	23	copy fasta	PPP2R5A	chr1	212280410	212366853