JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPP2R5A_chr1_212280410_212366853	0/1	t0002	1785	100	7	16	59	4	13	copy fasta	PPP2R5A	chr1	212280410	212366853
PPP2R5A_chr1_212280410_212366853	0/0	t0003	1785	61	0	11	44	4	2	copy fasta	PPP2R5A	chr1	212280410	212366853
PPP2R5A_chr1_212280410_212366853	0/0	t0004	1785	21	20	1	0	0	0	copy fasta	PPP2R5A	chr1	212280410	212366853
PPP2R5A_chr1_212280410_212366853	0/0	t0005	1785	18	17	1	0	0	0	copy fasta	PPP2R5A	chr1	212280410	212366853
PPP2R5A_chr1_212280410_212366853	0/0	t0006	1785	10	1	1	8	0	0	copy fasta	PPP2R5A	chr1	212280410	212366853
PPP2R5A_chr1_212280410_212366853	0/0	t0007	1785	6	6	0	0	0	0	copy fasta	PPP2R5A	chr1	212280410	212366853
PPP2R5A_chr1_212280410_212366853	0/0	t0008	1785	3	1	1	0	1	0	copy fasta	PPP2R5A	chr1	212280410	212366853
PPP2R5A_chr1_212280410_212366853	0/0	t0009	1785	3	0	0	3	0	0	copy fasta	PPP2R5A	chr1	212280410	212366853
PPP2R5A_chr1_212280410_212366853	0/0	t0010	1785	2	2	0	0	0	0	copy fasta	PPP2R5A	chr1	212280410	212366853
PPP2R5A_chr1_212280410_212366853	0/0	t0011	1785	1	0	0	1	0	0	copy fasta	PPP2R5A	chr1	212280410	212366853
PPP2R5A_chr1_212280410_212366853	0/0	t0012	1785	1	0	1	0	0	0	copy fasta	PPP2R5A	chr1	212280410	212366853
PPP2R5A_chr1_212280410_212366853	0/0	t0013	1785	1	0	0	1	0	0	copy fasta	PPP2R5A	chr1	212280410	212366853
PPP2R5A_chr1_212280410_212366853	0/0	t0014	1785	1	1	0	0	0	0	copy fasta	PPP2R5A	chr1	212280410	212366853
PPP2R5B_chr11_64919689_64939475	1/1	t0001	1236	218	37	52	96	9	22	copy fasta	PPP2R5B	chr11	64919689	64939475
PPP2R5B_chr11_64919689_64939475	0/0	t0002	1238	77	19	9	43	1	5	copy fasta	PPP2R5B	chr11	64919689	64939475
PPP2R5B_chr11_64919689_64939475	0/0	t0003	1238	65	0	4	48	3	10	copy fasta	PPP2R5B	chr11	64919689	64939475
PPP2R5B_chr11_64919689_64939475	0/0	t0004	1235	19	14	4	0	1	0	copy fasta	PPP2R5B	chr11	64919689	64939475
PPP2R5B_chr11_64919689_64939475	0/0	t0005	1236	11	4	4	0	2	1	copy fasta	PPP2R5B	chr11	64919689	64939475
PPP2R5B_chr11_64919689_64939475	0/0	t0006	1236	10	2	0	5	0	3	copy fasta	PPP2R5B	chr11	64919689	64939475
PPP2R5B_chr11_64919689_64939475	0/0	t0007	1236	10	10	0	0	0	0	copy fasta	PPP2R5B	chr11	64919689	64939475
PPP2R5B_chr11_64919689_64939475	0/0	t0008	1236	3	1	2	0	0	0	copy fasta	PPP2R5B	chr11	64919689	64939475
PPP2R5B_chr11_64919689_64939475	0/0	t0009	1236	2	0	0	2	0	0	copy fasta	PPP2R5B	chr11	64919689	64939475
PPP2R5B_chr11_64919689_64939475	0/0	t0010	1236	1	0	0	1	0	0	copy fasta	PPP2R5B	chr11	64919689	64939475
PPP2R5B_chr11_64919689_64939475	0/0	t0011	1238	1	0	0	1	0	0	copy fasta	PPP2R5B	chr11	64919689	64939475
PPP2R5B_chr11_64919689_64939475	0/0	t0012	1236	1	0	0	0	0	1	copy fasta	PPP2R5B	chr11	64919689	64939475
PPP2R5B_chr11_64919689_64939475	0/0	t0013	1238	1	0	0	0	0	1	copy fasta	PPP2R5B	chr11	64919689	64939475
PPP2R5B_chr11_64919689_64939475	0/0	t0014	1235	1	1	0	0	0	0	copy fasta	PPP2R5B	chr11	64919689	64939475
PPP2R5B_chr11_64919689_64939475	0/0	t0015	1236	1	1	0	0	0	0	copy fasta	PPP2R5B	chr11	64919689	64939475
PPP2R5B_chr11_64919689_64939475	0/0	t0016	1236	1	0	0	1	0	0	copy fasta	PPP2R5B	chr11	64919689	64939475
PPP2R5B_chr11_64919689_64939475	0/0	t0017	1236	1	0	0	1	0	0	copy fasta	PPP2R5B	chr11	64919689	64939475
PPP2R5B_chr11_64919689_64939475	0/0	t0018	1236	1	0	1	0	0	0	copy fasta	PPP2R5B	chr11	64919689	64939475
PPP2R5B_chr11_64919689_64939475	0/0	t0019	1236	1	0	0	1	0	0	copy fasta	PPP2R5B	chr11	64919689	64939475
PPP2R5B_chr11_64919689_64939475	0/0	t0020	1238	1	0	0	0	0	1	copy fasta	PPP2R5B	chr11	64919689	64939475
PPP2R5B_chr11_64919689_64939475	0/0	t0021	1236	1	0	0	1	0	0	copy fasta	PPP2R5B	chr11	64919689	64939475
PPP2R5B_chr11_64919689_64939475	0/0	t0022	1236	1	1	0	0	0	0	copy fasta	PPP2R5B	chr11	64919689	64939475
PPP2R5C_chr14_101756709_101932977	1/1	t0001	2891	75	17	18	31	2	5	copy fasta	PPP2R5C	chr14	101756709	101932977
PPP2R5C_chr14_101756709_101932977	0/0	t0002	2891	19	14	1	0	1	3	copy fasta	PPP2R5C	chr14	101756709	101932977
PPP2R5C_chr14_101756709_101932977	0/0	t0003	2891	12	1	1	7	1	2	copy fasta	PPP2R5C	chr14	101756709	101932977
PPP2R5C_chr14_101756709_101932977	0/0	t0004	2891	7	4	3	0	0	0	copy fasta	PPP2R5C	chr14	101756709	101932977
PPP2R5C_chr14_101756709_101932977	0/0	t0005	2889	4	4	0	0	0	0	copy fasta	PPP2R5C	chr14	101756709	101932977
PPP2R5C_chr14_101756709_101932977	0/0	t0006	2891	3	3	0	0	0	0	copy fasta	PPP2R5C	chr14	101756709	101932977
PPP2R5C_chr14_101756709_101932977	0/0	t0007	2889	3	3	0	0	0	0	copy fasta	PPP2R5C	chr14	101756709	101932977
PPP2R5C_chr14_101756709_101932977	0/0	t0008	2891	3	3	0	0	0	0	copy fasta	PPP2R5C	chr14	101756709	101932977
PPP2R5C_chr14_101756709_101932977	0/0	t0009	2888	1	0	1	0	0	0	copy fasta	PPP2R5C	chr14	101756709	101932977
PPP2R5C_chr14_101756709_101932977	0/0	t0010	2888	1	0	0	1	0	0	copy fasta	PPP2R5C	chr14	101756709	101932977
PPP2R5C_chr14_101756709_101932977	0/0	t0011	2888	1	1	0	0	0	0	copy fasta	PPP2R5C	chr14	101756709	101932977
PPP2R5C_chr14_101756709_101932977	0/0	t0012	2878	1	0	1	0	0	0	copy fasta	PPP2R5C	chr14	101756709	101932977
PPP2R5C_chr14_101756709_101932977	0/0	t0013	2891	1	1	0	0	0	0	copy fasta	PPP2R5C	chr14	101756709	101932977
PPP2R5C_chr14_101756709_101932977	0/0	t0014	2891	1	0	0	0	0	1	copy fasta	PPP2R5C	chr14	101756709	101932977
PPP2R5C_chr14_101756709_101932977	0/0	t0015	2891	1	0	1	0	0	0	copy fasta	PPP2R5C	chr14	101756709	101932977