JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPP2R5C_chr14_101756709_101932977	0/0	t0016	2891	1	0	0	1	0	0	copy fasta	PPP2R5C	chr14	101756709	101932977
PPP2R5C_chr14_101756709_101932977	0/0	t0017	2891	1	1	0	0	0	0	copy fasta	PPP2R5C	chr14	101756709	101932977
PPP2R5C_chr14_101756709_101932977	0/0	t0018	2891	1	1	0	0	0	0	copy fasta	PPP2R5C	chr14	101756709	101932977
PPP2R5C_chr14_101756709_101932977	0/0	t0019	2891	1	0	0	0	0	1	copy fasta	PPP2R5C	chr14	101756709	101932977
PPP2R5C_chr14_101756709_101932977	0/0	t0020	2891	1	1	0	0	0	0	copy fasta	PPP2R5C	chr14	101756709	101932977
PPP2R5D_chr6_42979570_43017342	1/1	t0001	1165	281	77	57	107	10	28	copy fasta	PPP2R5D	chr6	42979570	43017342
PPP2R5D_chr6_42979570_43017342	0/0	t0002	1165	9	7	2	0	0	0	copy fasta	PPP2R5D	chr6	42979570	43017342
PPP2R5D_chr6_42979570_43017342	0/0	t0003	1153	6	0	4	0	0	2	copy fasta	PPP2R5D	chr6	42979570	43017342
PPP2R5D_chr6_42979570_43017342	0/0	t0004	1165	3	3	0	0	0	0	copy fasta	PPP2R5D	chr6	42979570	43017342
PPP2R5D_chr6_42979570_43017342	0/0	t0005	1165	2	2	0	0	0	0	copy fasta	PPP2R5D	chr6	42979570	43017342
PPP2R5D_chr6_42979570_43017342	0/0	t0006	1165	2	2	0	0	0	0	copy fasta	PPP2R5D	chr6	42979570	43017342
PPP2R5D_chr6_42979570_43017342	0/0	t0007	1165	1	1	0	0	0	0	copy fasta	PPP2R5D	chr6	42979570	43017342
PPP2R5D_chr6_42979570_43017342	0/0	t0008	1165	1	0	1	0	0	0	copy fasta	PPP2R5D	chr6	42979570	43017342
PPP2R5D_chr6_42979570_43017342	0/0	t0009	1165	1	0	0	1	0	0	copy fasta	PPP2R5D	chr6	42979570	43017342
PPP2R5E_chr14_63366364_63548377	0/0	t0001	5248	38	7	4	22	0	5	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0002	5215	21	1	3	16	0	1	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0003	5215	17	3	4	9	1	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0004	5248	12	1	1	8	1	1	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0005	5239	11	0	0	11	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0006	5217	11	2	3	6	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0007	5235	10	7	3	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0008	5217	9	3	1	5	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0009	5250	8	1	5	2	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	1/0	t0010	5252	6	0	2	2	0	1	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0011	5267	4	2	2	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0012	5239	3	0	0	3	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0013	5246	3	0	0	3	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0014	5256	3	0	0	3	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0015	5248	2	2	0	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0016	5271	2	2	0	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0017	5269	2	2	0	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0018	5261	2	2	0	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0019	5255	2	2	0	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0020	5242	2	0	0	2	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0021	5219	2	0	0	0	0	2	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0022	5246	2	0	0	2	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0023	5263	2	2	0	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0024	5261	2	2	0	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0025	5260	2	0	0	2	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0026	5258	2	0	0	2	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0027	5262	2	2	0	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0028	5243	2	2	0	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0029	5218	2	0	0	1	0	1	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0030	5242	2	0	2	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0031	5239	2	0	0	2	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0032	5248	1	0	0	0	0	1	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0033	5247	1	1	0	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0034	5270	1	1	0	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0035	5215	1	0	1	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0036	5255	1	1	0	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377