JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
PPP2R5E_chr14_63366364_63548377	0/0	t0037	5274	1	1	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0038	5271	1	1	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0039	5268	1	1	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0040	5265	1	1	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0041	5258	1	1	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0042	5256	1	0	0	1	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0043	5254	1	1	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0044	5252	1	0	1	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0045	5250	1	1	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0046	5249	1	0	0	1	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0047	5235	1	1	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0048	5276	1	1	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0049	5265	1	1	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0050	5263	1	1	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0051	5241	1	1	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0052	5260	1	1	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0053	5268	1	1	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0054	5218	1	0	0	1	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0055	5253	1	1	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0056	5252	1	1	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0057	5259	1	1	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0058	5257	1	1	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0059	5259	1	1	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0060	5264	1	1	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0061	5260	1	1	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0062	5245	1	0	0	1	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0063	5246	1	0	0	1	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0064	5274	1	1	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0065	5263	1	1	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/1	t0066	5260	1	0	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0067	5254	1	0	0	0	1	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0068	5255	1	1	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0069	5249	1	0	1	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0070	5247	1	1	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0071	5248	1	0	1	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0072	5235	1	1	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0073	5272	1	1	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0074	5274	1	1	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0075	5267	1	1	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0076	5266	1	0	0	0	1	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0077	5265	1	1	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0078	5264	1	0	0	1	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0079	5263	1	1	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0080	5260	1	0	1	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0081	5260	1	1	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0082	5264	1	1	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0083	5215	1	0	0	1	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0084	5215	1	0	0	1	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0085	5253	1	1	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0086	5255	1	1	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377