JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPP2R5E_chr14_63366364_63548377	0/0	t0087	5269	1	1	0	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0088	5265	1	0	1	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0089	5273	1	1	0	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0090	5217	1	0	0	1	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0091	5274	1	1	0	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0092	5270	1	1	0	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP2R5E_chr14_63366364_63548377	0/0	t0093	5217	1	1	0	0	0	0	copy fasta	PPP2R5E	chr14	63366364	63548377
PPP3CA_chr4_101018418_101352526	1/0	t0001	3178	30	3	5	20	0	1	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0002	3184	29	1	8	15	0	5	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0003	3188	9	0	0	8	0	1	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0004	3182	8	0	0	6	0	2	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0005	3178	7	3	2	0	0	2	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0006	3184	5	3	1	0	1	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0007	3183	5	5	0	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/1	t0008	3177	5	0	3	1	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0009	3185	4	4	0	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0010	3183	4	0	1	1	1	1	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0011	3180	4	3	1	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0012	3180	4	3	1	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0013	3177	3	2	0	0	1	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0014	3179	3	0	1	1	0	1	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0015	3193	2	2	0	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0016	3182	2	1	0	1	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0017	3184	2	2	0	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0018	3185	2	2	0	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0019	3182	2	2	0	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0020	3182	2	2	0	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0021	3181	2	2	0	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0022	3184	2	2	0	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0023	3182	2	2	0	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0024	3180	2	2	0	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0025	3179	2	2	0	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0026	3179	2	0	1	0	0	1	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0027	3189	1	0	1	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0028	3193	1	1	0	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0029	3189	1	1	0	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0030	3190	1	1	0	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0031	3189	1	1	0	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0032	3182	1	0	1	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0033	3184	1	1	0	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0034	3187	1	0	0	1	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0035	3187	1	0	0	1	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0036	3186	1	0	1	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0037	3183	1	1	0	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0038	3182	1	1	0	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0039	3186	1	1	0	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0040	3185	1	0	1	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0041	3183	1	0	1	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0042	3183	1	0	0	0	0	1	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0043	3183	1	1	0	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526