Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATP5F1A_chr18_46075248_46103296	0/0	t0042	4100	1	0	0	0	0	1	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0043	4099	1	0	1	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0044	4098	1	1	0	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0045	4099	1	0	0	1	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0046	4099	1	0	0	0	1	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0047	4099	1	0	0	1	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0048	4100	1	0	1	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0049	4100	1	0	1	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0050	4099	1	0	1	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0051	4101	1	0	0	0	1	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0052	4087	1	0	0	1	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0053	4100	1	0	1	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0054	4100	1	0	0	0	0	1	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0055	4098	1	0	0	1	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0056	4098	1	0	0	1	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0057	4099	1	0	0	1	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0058	4101	1	0	1	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0059	4100	1	0	0	1	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0060	4102	1	0	0	1	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0061	4102	1	0	1	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0062	4101	1	0	0	1	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0063	4100	1	0	0	1	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0064	4100	1	0	0	1	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0065	4101	1	0	1	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0066	4102	1	0	1	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0067	4103	1	1	0	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0068	4103	1	0	0	0	0	1	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0069	4102	1	0	0	1	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0070	4100	1	0	0	1	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0071	4100	1	0	0	0	1	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0072	4101	1	0	0	1	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0073	4086	1	1	0	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0074	4088	1	1	0	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0075	4088	1	0	0	0	1	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0076	4087	1	0	0	1	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0077	4088	1	0	0	1	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0078	4087	1	1	0	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0079	4095	1	1	0	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0080	4097	1	1	0	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0081	4087	1	1	0	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0082	4088	1	1	0	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0083	4088	1	1	0	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0084	4087	1	1	0	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0085	4088	1	0	0	1	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0086	4089	1	0	0	1	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0087	4091	1	0	0	1	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0088	4089	1	0	1	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0089	4089	1	1	0	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0090	4089	1	0	0	1	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0091	4090	1	0	0	0	0	1	copy fasta	ATP5F1A	chr18	46075248	46103296