JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPP3CA_chr4_101018418_101352526	0/0	t0044	3187	1	0	0	1	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0045	3185	1	0	0	1	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0046	3185	1	1	0	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0047	3184	1	0	0	0	0	1	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0048	3185	1	1	0	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0049	3188	1	0	0	0	0	1	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0050	3184	1	1	0	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0051	3181	1	1	0	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0052	3181	1	0	1	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0053	3182	1	1	0	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0054	3181	1	1	0	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0055	3185	1	1	0	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0056	3183	1	1	0	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0057	3181	1	1	0	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0058	3177	1	0	0	0	1	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0059	3177	1	1	0	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0060	3177	1	0	0	1	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0061	3177	1	1	0	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0062	3178	1	0	1	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0063	3178	1	0	0	1	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0064	3178	1	1	0	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0065	3181	1	1	0	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0066	3179	1	0	0	1	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0067	3181	1	0	1	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0068	3180	1	0	1	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0069	3183	1	0	0	0	0	1	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0070	3179	1	1	0	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0071	3180	1	0	0	0	0	1	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0072	3177	1	0	1	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0073	3178	1	0	0	0	0	1	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CA_chr4_101018418_101352526	0/0	t0074	3177	1	1	0	0	0	0	copy fasta	PPP3CA	chr4	101018418	101352526
PPP3CB_chr10_73431433_73501024	0/0	t0001	1945	111	41	8	53	0	9	copy fasta	PPP3CB	chr10	73431433	73501024
PPP3CB_chr10_73431433_73501024	1/1	t0002	1945	69	11	17	30	0	9	copy fasta	PPP3CB	chr10	73431433	73501024
PPP3CB_chr10_73431433_73501024	0/0	t0003	1944	15	13	2	0	0	0	copy fasta	PPP3CB	chr10	73431433	73501024
PPP3CB_chr10_73431433_73501024	0/0	t0004	1945	1	0	1	0	0	0	copy fasta	PPP3CB	chr10	73431433	73501024
PPP3CB_chr10_73431433_73501024	0/0	t0005	1945	1	0	1	0	0	0	copy fasta	PPP3CB	chr10	73431433	73501024
PPP3CB_chr10_73431433_73501024	0/0	t0006	1945	1	1	0	0	0	0	copy fasta	PPP3CB	chr10	73431433	73501024
PPP3CB_chr10_73431433_73501024	0/0	t0007	1945	1	1	0	0	0	0	copy fasta	PPP3CB	chr10	73431433	73501024
PPP3CB_chr10_73431433_73501024	0/0	t0008	1945	1	1	0	0	0	0	copy fasta	PPP3CB	chr10	73431433	73501024
PPP3CB_chr10_73431433_73501024	0/0	t0009	1945	1	0	1	0	0	0	copy fasta	PPP3CB	chr10	73431433	73501024
PPP3CB_chr10_73431433_73501024	0/0	t0010	1945	1	0	0	1	0	0	copy fasta	PPP3CB	chr10	73431433	73501024
PPP3CC_chr8_22436078_22546125	1/0	t0001	656	94	6	22	47	6	12	copy fasta	PPP3CC	chr8	22436078	22546125
PPP3CC_chr8_22436078_22546125	0/1	t0002	656	77	1	11	48	4	12	copy fasta	PPP3CC	chr8	22436078	22546125
PPP3CC_chr8_22436078_22546125	0/0	t0003	656	56	38	4	13	0	1	copy fasta	PPP3CC	chr8	22436078	22546125
PPP3CC_chr8_22436078_22546125	0/0	t0004	656	25	17	3	2	0	3	copy fasta	PPP3CC	chr8	22436078	22546125
PPP3CC_chr8_22436078_22546125	0/0	t0005	656	23	2	4	10	0	7	copy fasta	PPP3CC	chr8	22436078	22546125
PPP3CC_chr8_22436078_22546125	0/0	t0006	656	16	13	3	0	0	0	copy fasta	PPP3CC	chr8	22436078	22546125
PPP3CC_chr8_22436078_22546125	0/0	t0007	656	7	0	2	5	0	0	copy fasta	PPP3CC	chr8	22436078	22546125
PPP3CC_chr8_22436078_22546125	0/0	t0008	656	6	0	0	6	0	0	copy fasta	PPP3CC	chr8	22436078	22546125
PPP3CC_chr8_22436078_22546125	0/0	t0009	656	6	6	0	0	0	0	copy fasta	PPP3CC	chr8	22436078	22546125