JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPP3CC_chr8_22436078_22546125	0/0	t0010	656	3	3	0	0	0	0	copy fasta	PPP3CC	chr8	22436078	22546125
PPP3CC_chr8_22436078_22546125	0/0	t0011	656	3	0	0	0	2	1	copy fasta	PPP3CC	chr8	22436078	22546125
PPP3CC_chr8_22436078_22546125	0/0	t0012	656	3	3	0	0	0	0	copy fasta	PPP3CC	chr8	22436078	22546125
PPP3CC_chr8_22436078_22546125	0/0	t0013	656	2	0	0	2	0	0	copy fasta	PPP3CC	chr8	22436078	22546125
PPP3CC_chr8_22436078_22546125	0/0	t0014	656	1	0	0	1	0	0	copy fasta	PPP3CC	chr8	22436078	22546125
PPP3CC_chr8_22436078_22546125	0/0	t0015	656	1	1	0	0	0	0	copy fasta	PPP3CC	chr8	22436078	22546125
PPP3CC_chr8_22436078_22546125	0/0	t0016	656	1	0	1	0	0	0	copy fasta	PPP3CC	chr8	22436078	22546125
PPP3CC_chr8_22436078_22546125	0/0	t0017	656	1	0	0	1	0	0	copy fasta	PPP3CC	chr8	22436078	22546125
PPP3CC_chr8_22436078_22546125	0/0	t0018	656	1	0	0	1	0	0	copy fasta	PPP3CC	chr8	22436078	22546125
PPP3R1_chr2_68173857_68257532	1/1	t0001	2512	100	7	14	68	3	6	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R1_chr2_68173857_68257532	0/0	t0002	2518	82	3	16	52	3	8	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R1_chr2_68173857_68257532	0/0	t0003	2517	75	22	13	30	4	6	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R1_chr2_68173857_68257532	0/0	t0004	2509	16	3	8	1	0	4	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R1_chr2_68173857_68257532	0/0	t0005	2511	14	0	8	4	1	1	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R1_chr2_68173857_68257532	0/0	t0006	2516	11	11	0	0	0	0	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R1_chr2_68173857_68257532	0/0	t0007	2517	9	2	4	1	1	1	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R1_chr2_68173857_68257532	0/0	t0008	2516	8	8	0	0	0	0	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R1_chr2_68173857_68257532	0/0	t0009	2517	6	4	2	0	0	0	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R1_chr2_68173857_68257532	0/0	t0010	2519	6	0	1	5	0	0	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R1_chr2_68173857_68257532	0/0	t0011	2516	5	5	0	0	0	0	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R1_chr2_68173857_68257532	0/0	t0012	2516	5	3	1	1	0	0	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R1_chr2_68173857_68257532	0/0	t0013	2519	5	0	0	4	0	1	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R1_chr2_68173857_68257532	0/0	t0014	2516	5	4	1	0	0	0	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R1_chr2_68173857_68257532	0/0	t0015	2516	4	4	0	0	0	0	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R1_chr2_68173857_68257532	0/0	t0016	2517	4	1	1	0	0	2	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R1_chr2_68173857_68257532	0/0	t0017	2518	3	1	1	1	0	0	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R1_chr2_68173857_68257532	0/0	t0018	2512	3	0	0	3	0	0	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R1_chr2_68173857_68257532	0/0	t0019	2513	2	0	0	1	0	1	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R1_chr2_68173857_68257532	0/0	t0020	2516	2	1	1	0	0	0	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R1_chr2_68173857_68257532	0/0	t0021	2516	2	2	0	0	0	0	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R1_chr2_68173857_68257532	0/0	t0022	2519	2	0	0	1	0	1	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R1_chr2_68173857_68257532	0/0	t0023	2518	2	0	0	2	0	0	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R1_chr2_68173857_68257532	0/0	t0024	2513	2	2	0	0	0	0	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R1_chr2_68173857_68257532	0/0	t0025	2512	2	0	0	1	0	1	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R1_chr2_68173857_68257532	0/0	t0026	2518	1	1	0	0	0	0	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R1_chr2_68173857_68257532	0/0	t0027	2515	1	1	0	0	0	0	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R1_chr2_68173857_68257532	0/0	t0028	2516	1	1	0	0	0	0	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R1_chr2_68173857_68257532	0/0	t0029	2516	1	1	0	0	0	0	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R1_chr2_68173857_68257532	0/0	t0030	2518	1	0	0	1	0	0	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R1_chr2_68173857_68257532	0/0	t0031	2517	1	0	1	0	0	0	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R1_chr2_68173857_68257532	0/0	t0032	2512	1	0	0	1	0	0	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R1_chr2_68173857_68257532	0/0	t0033	2512	1	0	0	1	0	0	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R1_chr2_68173857_68257532	0/0	t0034	2518	1	0	0	1	0	0	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R1_chr2_68173857_68257532	0/0	t0035	2509	1	0	0	0	0	1	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R1_chr2_68173857_68257532	0/0	t0036	2518	1	0	0	0	0	1	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R1_chr2_68173857_68257532	0/0	t0037	2512	1	0	0	0	0	1	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R1_chr2_68173857_68257532	0/0	t0038	2518	1	0	1	0	0	0	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R1_chr2_68173857_68257532	0/0	t0039	2512	1	0	0	0	0	1	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R1_chr2_68173857_68257532	0/0	t0040	2517	1	0	1	0	0	0	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R1_chr2_68173857_68257532	0/0	t0041	2518	1	0	0	1	0	0	copy fasta	PPP3R1	chr2	68173857	68257532