JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPP3R1_chr2_68173857_68257532	0/0	t0042	2509	1	1	0	0	0	0	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R1_chr2_68173857_68257532	0/0	t0043	2518	1	1	0	0	0	0	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R1_chr2_68173857_68257532	0/0	t0044	2512	1	1	0	0	0	0	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R1_chr2_68173857_68257532	0/0	t0045	2509	1	0	0	1	0	0	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R1_chr2_68173857_68257532	0/0	t0046	2517	1	1	0	0	0	0	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R1_chr2_68173857_68257532	0/0	t0047	2513	1	1	0	0	0	0	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R1_chr2_68173857_68257532	0/0	t0048	2517	1	0	0	1	0	0	copy fasta	PPP3R1	chr2	68173857	68257532
PPP3R2_chr9_101586604_101599969	1/1	t0001	2854	152	23	32	71	4	20	copy fasta	PPP3R2	chr9	101586604	101599969
PPP3R2_chr9_101586604_101599969	0/0	t0002	2854	93	12	6	69	0	6	copy fasta	PPP3R2	chr9	101586604	101599969
PPP3R2_chr9_101586604_101599969	0/0	t0003	2853	72	6	15	43	2	6	copy fasta	PPP3R2	chr9	101586604	101599969
PPP3R2_chr9_101586604_101599969	0/0	t0004	2853	30	4	9	9	4	4	copy fasta	PPP3R2	chr9	101586604	101599969
PPP3R2_chr9_101586604_101599969	0/0	t0005	2853	16	4	6	0	4	2	copy fasta	PPP3R2	chr9	101586604	101599969
PPP3R2_chr9_101586604_101599969	0/0	t0006	2853	14	9	4	0	1	0	copy fasta	PPP3R2	chr9	101586604	101599969
PPP3R2_chr9_101586604_101599969	0/0	t0007	2853	11	5	0	2	2	2	copy fasta	PPP3R2	chr9	101586604	101599969
PPP3R2_chr9_101586604_101599969	0/0	t0008	2854	11	11	0	0	0	0	copy fasta	PPP3R2	chr9	101586604	101599969
PPP3R2_chr9_101586604_101599969	0/0	t0009	2854	8	8	0	0	0	0	copy fasta	PPP3R2	chr9	101586604	101599969
PPP3R2_chr9_101586604_101599969	0/0	t0010	2854	5	0	0	4	0	1	copy fasta	PPP3R2	chr9	101586604	101599969
PPP3R2_chr9_101586604_101599969	0/0	t0011	2853	4	4	0	0	0	0	copy fasta	PPP3R2	chr9	101586604	101599969
PPP3R2_chr9_101586604_101599969	0/0	t0012	2854	3	0	0	3	0	0	copy fasta	PPP3R2	chr9	101586604	101599969
PPP3R2_chr9_101586604_101599969	0/0	t0013	2853	3	0	2	0	1	0	copy fasta	PPP3R2	chr9	101586604	101599969
PPP3R2_chr9_101586604_101599969	0/0	t0014	2853	2	0	2	0	0	0	copy fasta	PPP3R2	chr9	101586604	101599969
PPP3R2_chr9_101586604_101599969	0/0	t0015	2854	2	0	1	1	0	0	copy fasta	PPP3R2	chr9	101586604	101599969
PPP3R2_chr9_101586604_101599969	0/0	t0016	2853	1	0	0	1	0	0	copy fasta	PPP3R2	chr9	101586604	101599969
PPP3R2_chr9_101586604_101599969	0/0	t0017	2853	1	1	0	0	0	0	copy fasta	PPP3R2	chr9	101586604	101599969
PPP3R2_chr9_101586604_101599969	0/0	t0018	2854	1	0	0	1	0	0	copy fasta	PPP3R2	chr9	101586604	101599969
PPP3R2_chr9_101586604_101599969	0/0	t0019	2853	1	1	0	0	0	0	copy fasta	PPP3R2	chr9	101586604	101599969
PPP3R2_chr9_101586604_101599969	0/0	t0020	2853	1	0	0	1	0	0	copy fasta	PPP3R2	chr9	101586604	101599969
PPP3R2_chr9_101586604_101599969	0/0	t0021	2854	1	1	0	0	0	0	copy fasta	PPP3R2	chr9	101586604	101599969
PPP3R2_chr9_101586604_101599969	0/0	t0022	2854	1	0	0	1	0	0	copy fasta	PPP3R2	chr9	101586604	101599969
PPP3R2_chr9_101586604_101599969	0/0	t0023	2854	1	1	0	0	0	0	copy fasta	PPP3R2	chr9	101586604	101599969
PPP3R2_chr9_101586604_101599969	0/0	t0024	2854	1	0	1	0	0	0	copy fasta	PPP3R2	chr9	101586604	101599969
PPP3R2_chr9_101586604_101599969	0/0	t0025	2853	1	1	0	0	0	0	copy fasta	PPP3R2	chr9	101586604	101599969
PPP3R2_chr9_101586604_101599969	0/0	t0026	2854	1	1	0	0	0	0	copy fasta	PPP3R2	chr9	101586604	101599969
PPP3R2_chr9_101586604_101599969	0/0	t0027	2854	1	1	0	0	0	0	copy fasta	PPP3R2	chr9	101586604	101599969
PPP3R2_chr9_101586604_101599969	0/0	t0028	2854	1	0	0	1	0	0	copy fasta	PPP3R2	chr9	101586604	101599969
PPP3R2_chr9_101586604_101599969	0/0	t0029	2853	1	0	0	0	0	1	copy fasta	PPP3R2	chr9	101586604	101599969
PPP3R2_chr9_101586604_101599969	0/0	t0030	2854	1	0	0	1	0	0	copy fasta	PPP3R2	chr9	101586604	101599969
PPP3R2_chr9_101586604_101599969	0/0	t0031	2853	1	1	0	0	0	0	copy fasta	PPP3R2	chr9	101586604	101599969
PPP3R2_chr9_101586604_101599969	0/0	t0032	2853	1	1	0	0	0	0	copy fasta	PPP3R2	chr9	101586604	101599969
PPP3R2_chr9_101586604_101599969	0/0	t0033	2853	1	1	0	0	0	0	copy fasta	PPP3R2	chr9	101586604	101599969
PPP3R2_chr9_101586604_101599969	0/0	t0034	2853	1	0	0	1	0	0	copy fasta	PPP3R2	chr9	101586604	101599969
PPP3R2_chr9_101586604_101599969	0/0	t0035	2853	1	0	0	0	0	1	copy fasta	PPP3R2	chr9	101586604	101599969
PPP3R2_chr9_101586604_101599969	0/0	t0036	2853	1	0	0	1	0	0	copy fasta	PPP3R2	chr9	101586604	101599969
PPP3R2_chr9_101586604_101599969	0/0	t0037	2816	1	0	0	0	0	1	copy fasta	PPP3R2	chr9	101586604	101599969
PPP4C_chr16_30070994_30090376	1/0	t0001	479	198	36	50	89	2	20	copy fasta	PPP4C	chr16	30070994	30090376
PPP4C_chr16_30070994_30090376	0/1	t0002	480	148	39	18	66	6	18	copy fasta	PPP4C	chr16	30070994	30090376
PPP4C_chr16_30070994_30090376	0/0	t0003	480	8	7	1	0	0	0	copy fasta	PPP4C	chr16	30070994	30090376
PPP4C_chr16_30070994_30090376	0/0	t0004	482	3	3	0	0	0	0	copy fasta	PPP4C	chr16	30070994	30090376
PPP4C_chr16_30070994_30090376	0/0	t0005	482	2	2	0	0	0	0	copy fasta	PPP4C	chr16	30070994	30090376
PPP4C_chr16_30070994_30090376	0/0	t0006	485	2	0	1	1	0	0	copy fasta	PPP4C	chr16	30070994	30090376