JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPP4C_chr16_30070994_30090376	0/0	t0007	482	2	1	0	1	0	0	copy fasta	PPP4C	chr16	30070994	30090376
PPP4C_chr16_30070994_30090376	0/0	t0008	479	2	0	0	2	0	0	copy fasta	PPP4C	chr16	30070994	30090376
PPP4C_chr16_30070994_30090376	0/0	t0009	479	1	0	0	1	0	0	copy fasta	PPP4C	chr16	30070994	30090376
PPP4C_chr16_30070994_30090376	0/0	t0010	486	1	1	0	0	0	0	copy fasta	PPP4C	chr16	30070994	30090376
PPP4C_chr16_30070994_30090376	0/0	t0011	480	1	1	0	0	0	0	copy fasta	PPP4C	chr16	30070994	30090376
PPP4R1_chr18_9541794_9619559	1/1	t0001	1071	380	91	73	166	16	32	copy fasta	PPP4R1	chr18	9541794	9619559
PPP4R1_chr18_9541794_9619559	0/0	t0002	1071	3	1	2	0	0	0	copy fasta	PPP4R1	chr18	9541794	9619559
PPP4R1_chr18_9541794_9619559	0/0	t0003	1071	2	2	0	0	0	0	copy fasta	PPP4R1	chr18	9541794	9619559
PPP4R1_chr18_9541794_9619559	0/0	t0004	1071	1	0	1	0	0	0	copy fasta	PPP4R1	chr18	9541794	9619559
PPP4R1_chr18_9541794_9619559	0/0	t0005	1071	1	0	0	1	0	0	copy fasta	PPP4R1	chr18	9541794	9619559
PPP4R1_chr18_9541794_9619559	0/0	t0006	1071	1	0	0	1	0	0	copy fasta	PPP4R1	chr18	9541794	9619559
PPP4R2_chr3_72991811_73074198	0/0	t0001	3703	72	16	14	39	1	2	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0002	3704	37	1	7	22	2	5	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0003	3710	32	3	3	22	0	4	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/1	t0004	3710	25	8	7	5	2	2	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0005	3705	16	2	2	11	0	1	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0006	3716	11	0	1	8	1	1	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0007	3712	11	5	0	4	0	2	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0008	3714	10	0	4	3	1	2	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0009	3708	8	8	0	0	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0010	3712	8	0	0	6	1	1	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0011	3714	8	0	0	6	0	2	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0012	3710	7	7	0	0	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0013	3712	7	7	0	0	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0014	3707	6	3	1	2	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0015	3709	6	0	0	6	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0016	3703	5	5	0	0	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0017	3706	5	0	0	4	0	1	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0018	3708	5	4	1	0	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0019	3708	5	4	0	1	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0020	3719	4	0	0	4	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0021	3703	3	3	0	0	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0022	3704	3	0	0	3	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0023	3718	3	0	0	1	0	2	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0024	3712	3	3	0	0	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0025	3712	3	0	0	0	0	3	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0026	3712	3	1	1	0	0	1	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0027	3711	3	0	0	0	0	3	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0028	3701	2	0	0	0	0	2	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0029	3704	2	0	0	2	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0030	3712	2	2	0	0	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0031	3720	2	0	0	1	0	1	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0032	3724	2	0	2	0	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0033	3704	2	2	0	0	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0034	3708	2	1	0	0	0	1	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0035	3714	2	2	0	0	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0036	3716	2	0	1	0	0	1	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0037	3718	2	0	0	1	0	1	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0038	3691	1	0	0	1	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0039	3706	1	0	0	1	0	0	copy fasta	PPP4R2	chr3	72991811	73074198