JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPP4R2_chr3_72991811_73074198	1/0	t0040	3704	1	0	0	0	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0041	3703	1	0	0	1	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0042	3705	1	0	0	1	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0043	3707	1	1	0	0	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0044	3709	1	1	0	0	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0045	3709	1	1	0	0	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0046	3711	1	1	0	0	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0047	3703	1	0	0	1	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0048	3716	1	1	0	0	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0049	3722	1	1	0	0	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0050	3722	1	0	0	1	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0051	3702	1	1	0	0	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0052	3710	1	0	0	1	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0053	3715	1	0	1	0	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0054	3714	1	0	0	0	0	1	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0055	3716	1	0	0	0	0	1	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0056	3716	1	1	0	0	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0057	3718	1	0	1	0	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0058	3718	1	0	1	0	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0059	3721	1	0	0	1	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0060	3723	1	0	0	1	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0061	3725	1	0	1	0	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0062	3729	1	0	0	1	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0063	3713	1	0	0	0	0	1	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0064	3719	1	0	0	1	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0065	3703	1	0	0	1	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0066	3707	1	1	0	0	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0067	3704	1	0	0	0	0	1	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R2_chr3_72991811_73074198	0/0	t0068	3706	1	0	0	1	0	0	copy fasta	PPP4R2	chr3	72991811	73074198
PPP4R3A_chr14_91452508_91515310	1/0	t0001	1915	182	39	28	85	10	19	copy fasta	PPP4R3A	chr14	91452508	91515310
PPP4R3A_chr14_91452508_91515310	0/0	t0002	1915	149	38	25	62	7	17	copy fasta	PPP4R3A	chr14	91452508	91515310
PPP4R3A_chr14_91452508_91515310	0/0	t0003	1915	21	2	5	14	0	0	copy fasta	PPP4R3A	chr14	91452508	91515310
PPP4R3A_chr14_91452508_91515310	0/0	t0004	1915	3	0	0	3	0	0	copy fasta	PPP4R3A	chr14	91452508	91515310
PPP4R3A_chr14_91452508_91515310	0/1	t0005	1916	3	0	0	0	1	1	copy fasta	PPP4R3A	chr14	91452508	91515310
PPP4R3A_chr14_91452508_91515310	0/0	t0006	1915	3	0	0	3	0	0	copy fasta	PPP4R3A	chr14	91452508	91515310
PPP4R3A_chr14_91452508_91515310	0/0	t0007	1915	2	0	2	0	0	0	copy fasta	PPP4R3A	chr14	91452508	91515310
PPP4R3A_chr14_91452508_91515310	0/0	t0008	1915	1	1	0	0	0	0	copy fasta	PPP4R3A	chr14	91452508	91515310
PPP4R3A_chr14_91452508_91515310	0/0	t0009	1902	1	0	0	0	0	1	copy fasta	PPP4R3A	chr14	91452508	91515310
PPP4R3A_chr14_91452508_91515310	0/0	t0010	1915	1	0	0	1	0	0	copy fasta	PPP4R3A	chr14	91452508	91515310
PPP4R3A_chr14_91452508_91515310	0/0	t0011	1915	1	0	0	0	0	1	copy fasta	PPP4R3A	chr14	91452508	91515310
PPP4R3A_chr14_91452508_91515310	0/0	t0012	1915	1	0	0	0	0	1	copy fasta	PPP4R3A	chr14	91452508	91515310
PPP4R3A_chr14_91452508_91515310	0/0	t0013	1915	1	0	1	0	0	0	copy fasta	PPP4R3A	chr14	91452508	91515310
PPP4R3A_chr14_91452508_91515310	0/0	t0014	1915	1	0	1	0	0	0	copy fasta	PPP4R3A	chr14	91452508	91515310
PPP4R3B_chr2_55542292_55622622	1/1	t0001	2957	122	25	15	64	1	15	copy fasta	PPP4R3B	chr2	55542292	55622622
PPP4R3B_chr2_55542292_55622622	0/0	t0002	2957	115	23	17	64	3	8	copy fasta	PPP4R3B	chr2	55542292	55622622
PPP4R3B_chr2_55542292_55622622	0/0	t0003	2957	87	31	16	29	5	6	copy fasta	PPP4R3B	chr2	55542292	55622622
PPP4R3B_chr2_55542292_55622622	0/0	t0004	2957	11	0	5	0	0	6	copy fasta	PPP4R3B	chr2	55542292	55622622
PPP4R3B_chr2_55542292_55622622	0/0	t0005	2957	9	8	1	0	0	0	copy fasta	PPP4R3B	chr2	55542292	55622622
PPP4R3B_chr2_55542292_55622622	0/0	t0006	2957	5	0	3	0	1	1	copy fasta	PPP4R3B	chr2	55542292	55622622
PPP4R3B_chr2_55542292_55622622	0/0	t0007	2957	4	0	4	0	0	0	copy fasta	PPP4R3B	chr2	55542292	55622622