JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPP4R3B_chr2_55542292_55622622	0/0	t0008	2957	4	0	0	2	0	2	copy fasta	PPP4R3B	chr2	55542292	55622622
PPP4R3B_chr2_55542292_55622622	0/0	t0009	2957	3	3	0	0	0	0	copy fasta	PPP4R3B	chr2	55542292	55622622
PPP4R3B_chr2_55542292_55622622	0/0	t0010	2957	3	1	2	0	0	0	copy fasta	PPP4R3B	chr2	55542292	55622622
PPP4R3B_chr2_55542292_55622622	0/0	t0011	2957	2	0	0	0	0	2	copy fasta	PPP4R3B	chr2	55542292	55622622
PPP4R3B_chr2_55542292_55622622	0/0	t0012	2957	2	0	0	1	0	1	copy fasta	PPP4R3B	chr2	55542292	55622622
PPP4R3B_chr2_55542292_55622622	0/0	t0013	2957	1	1	0	0	0	0	copy fasta	PPP4R3B	chr2	55542292	55622622
PPP4R3B_chr2_55542292_55622622	0/0	t0014	2957	1	0	0	1	0	0	copy fasta	PPP4R3B	chr2	55542292	55622622
PPP4R3B_chr2_55542292_55622622	0/0	t0015	2957	1	0	1	0	0	0	copy fasta	PPP4R3B	chr2	55542292	55622622
PPP4R3B_chr2_55542292_55622622	0/0	t0016	2957	1	0	0	0	0	1	copy fasta	PPP4R3B	chr2	55542292	55622622
PPP4R3B_chr2_55542292_55622622	0/0	t0017	2957	1	0	0	1	0	0	copy fasta	PPP4R3B	chr2	55542292	55622622
PPP4R3B_chr2_55542292_55622622	0/0	t0018	2957	1	0	0	0	0	1	copy fasta	PPP4R3B	chr2	55542292	55622622
PPP4R3B_chr2_55542292_55622622	0/0	t0019	2957	1	0	0	1	0	0	copy fasta	PPP4R3B	chr2	55542292	55622622
PPP4R3B_chr2_55542292_55622622	0/0	t0020	2957	1	0	0	1	0	0	copy fasta	PPP4R3B	chr2	55542292	55622622
PPP4R3B_chr2_55542292_55622622	0/0	t0021	2957	1	0	0	1	0	0	copy fasta	PPP4R3B	chr2	55542292	55622622
PPP4R3B_chr2_55542292_55622622	0/0	t0022	2957	1	1	0	0	0	0	copy fasta	PPP4R3B	chr2	55542292	55622622
PPP4R3B_chr2_55542292_55622622	0/0	t0023	2957	1	1	0	0	0	0	copy fasta	PPP4R3B	chr2	55542292	55622622
PPP4R3B_chr2_55542292_55622622	0/0	t0024	2957	1	0	0	1	0	0	copy fasta	PPP4R3B	chr2	55542292	55622622
PPP4R3B_chr2_55542292_55622622	0/0	t0025	2957	1	1	0	0	0	0	copy fasta	PPP4R3B	chr2	55542292	55622622
PPP4R3B_chr2_55542292_55622622	0/0	t0026	2957	1	1	0	0	0	0	copy fasta	PPP4R3B	chr2	55542292	55622622
PPP4R3B_chr2_55542292_55622622	0/0	t0027	2957	1	0	0	0	0	1	copy fasta	PPP4R3B	chr2	55542292	55622622
PPP4R3C_chrX_27455207_27468341	0/1	t0001	637	172	10	43	85	6	27	copy fasta	PPP4R3C	chrX	27455207	27468341
PPP4R3C_chrX_27455207_27468341	1/0	t0002	637	106	26	16	53	5	5	copy fasta	PPP4R3C	chrX	27455207	27468341
PPP4R3C_chrX_27455207_27468341	0/0	t0003	637	20	19	1	0	0	0	copy fasta	PPP4R3C	chrX	27455207	27468341
PPP4R3C_chrX_27455207_27468341	0/0	t0004	637	11	10	1	0	0	0	copy fasta	PPP4R3C	chrX	27455207	27468341
PPP4R3C_chrX_27455207_27468341	0/0	t0005	637	5	5	0	0	0	0	copy fasta	PPP4R3C	chrX	27455207	27468341
PPP4R3C_chrX_27455207_27468341	0/0	t0006	638	4	0	0	4	0	0	copy fasta	PPP4R3C	chrX	27455207	27468341
PPP4R3C_chrX_27455207_27468341	0/0	t0007	637	4	4	0	0	0	0	copy fasta	PPP4R3C	chrX	27455207	27468341
PPP4R3C_chrX_27455207_27468341	0/0	t0008	638	1	0	0	1	0	0	copy fasta	PPP4R3C	chrX	27455207	27468341
PPP4R3C_chrX_27455207_27468341	0/0	t0009	637	1	0	0	1	0	0	copy fasta	PPP4R3C	chrX	27455207	27468341
PPP4R3C_chrX_27455207_27468341	0/0	t0010	637	1	1	0	0	0	0	copy fasta	PPP4R3C	chrX	27455207	27468341
PPP4R4_chr14_94169322_94284734	0/1	t0001	1236	175	43	38	61	6	26	copy fasta	PPP4R4	chr14	94169322	94284734
PPP4R4_chr14_94169322_94284734	0/0	t0002	1237	102	30	7	55	2	8	copy fasta	PPP4R4	chr14	94169322	94284734
PPP4R4_chr14_94169322_94284734	0/0	t0003	1236	5	0	5	0	0	0	copy fasta	PPP4R4	chr14	94169322	94284734
PPP4R4_chr14_94169322_94284734	0/0	t0004	1233	3	0	0	3	0	0	copy fasta	PPP4R4	chr14	94169322	94284734
PPP4R4_chr14_94169322_94284734	0/0	t0005	1236	3	3	0	0	0	0	copy fasta	PPP4R4	chr14	94169322	94284734
PPP4R4_chr14_94169322_94284734	0/0	t0006	1236	3	2	1	0	0	0	copy fasta	PPP4R4	chr14	94169322	94284734
PPP4R4_chr14_94169322_94284734	0/0	t0007	1235	3	3	0	0	0	0	copy fasta	PPP4R4	chr14	94169322	94284734
PPP4R4_chr14_94169322_94284734	0/0	t0008	1233	3	0	0	2	0	1	copy fasta	PPP4R4	chr14	94169322	94284734
PPP4R4_chr14_94169322_94284734	0/0	t0009	1237	1	1	0	0	0	0	copy fasta	PPP4R4	chr14	94169322	94284734
PPP4R4_chr14_94169322_94284734	0/0	t0010	1236	1	1	0	0	0	0	copy fasta	PPP4R4	chr14	94169322	94284734
PPP4R4_chr14_94169322_94284734	0/0	t0011	1236	1	0	1	0	0	0	copy fasta	PPP4R4	chr14	94169322	94284734
PPP4R4_chr14_94169322_94284734	0/0	t0012	1236	1	1	0	0	0	0	copy fasta	PPP4R4	chr14	94169322	94284734
PPP4R4_chr14_94169322_94284734	0/0	t0013	1236	1	1	0	0	0	0	copy fasta	PPP4R4	chr14	94169322	94284734
PPP4R4_chr14_94169322_94284734	0/0	t0014	1237	1	0	1	0	0	0	copy fasta	PPP4R4	chr14	94169322	94284734
PPP4R4_chr14_94169322_94284734	0/0	t0015	1237	1	0	1	0	0	0	copy fasta	PPP4R4	chr14	94169322	94284734
PPP4R4_chr14_94169322_94284734	0/0	t0016	1237	1	0	0	1	0	0	copy fasta	PPP4R4	chr14	94169322	94284734
PPP4R4_chr14_94169322_94284734	0/0	t0017	1237	1	0	0	0	0	1	copy fasta	PPP4R4	chr14	94169322	94284734
PPP4R4_chr14_94169322_94284734	0/0	t0018	1236	1	1	0	0	0	0	copy fasta	PPP4R4	chr14	94169322	94284734
PPP5C_chr19_46342087_46395975	1/1	t0001	640	306	74	54	123	14	39	copy fasta	PPP5C	chr19	46342087	46395975
PPP5C_chr19_46342087_46395975	0/0	t0002	640	66	2	14	44	3	3	copy fasta	PPP5C	chr19	46342087	46395975