JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPP5C_chr19_46342087_46395975	0/0	t0003	641	11	9	2	0	0	0	copy fasta	PPP5C	chr19	46342087	46395975
PPP5C_chr19_46342087_46395975	0/0	t0004	640	3	3	0	0	0	0	copy fasta	PPP5C	chr19	46342087	46395975
PPP5C_chr19_46342087_46395975	0/0	t0005	640	2	2	0	0	0	0	copy fasta	PPP5C	chr19	46342087	46395975
PPP5C_chr19_46342087_46395975	0/0	t0006	640	1	1	0	0	0	0	copy fasta	PPP5C	chr19	46342087	46395975
PPP5C_chr19_46342087_46395975	0/0	t0007	640	1	0	1	0	0	0	copy fasta	PPP5C	chr19	46342087	46395975
PPP5C_chr19_46342087_46395975	0/0	t0008	640	1	0	0	1	0	0	copy fasta	PPP5C	chr19	46342087	46395975
PPP5C_chr19_46342087_46395975	0/0	t0009	640	1	1	0	0	0	0	copy fasta	PPP5C	chr19	46342087	46395975
PPP5C_chr19_46342087_46395975	0/0	t0010	640	1	0	0	0	1	0	copy fasta	PPP5C	chr19	46342087	46395975
PPP5C_chr19_46342087_46395975	0/0	t0011	640	1	0	1	0	0	0	copy fasta	PPP5C	chr19	46342087	46395975
PPP6C_chr9_125141573_125194803	1/1	t0001	3186	173	51	34	67	6	13	copy fasta	PPP6C	chr9	125141573	125194803
PPP6C_chr9_125141573_125194803	0/0	t0002	3182	87	6	13	56	6	6	copy fasta	PPP6C	chr9	125141573	125194803
PPP6C_chr9_125141573_125194803	0/0	t0003	3182	43	0	1	36	0	6	copy fasta	PPP6C	chr9	125141573	125194803
PPP6C_chr9_125141573_125194803	0/0	t0004	3182	18	14	4	0	0	0	copy fasta	PPP6C	chr9	125141573	125194803
PPP6C_chr9_125141573_125194803	0/0	t0005	3185	17	0	0	16	0	1	copy fasta	PPP6C	chr9	125141573	125194803
PPP6C_chr9_125141573_125194803	0/0	t0006	3183	11	11	0	0	0	0	copy fasta	PPP6C	chr9	125141573	125194803
PPP6C_chr9_125141573_125194803	0/0	t0007	3181	10	0	5	0	2	3	copy fasta	PPP6C	chr9	125141573	125194803
PPP6C_chr9_125141573_125194803	0/0	t0008	3185	9	0	0	9	0	0	copy fasta	PPP6C	chr9	125141573	125194803
PPP6C_chr9_125141573_125194803	0/0	t0009	3185	7	0	5	2	0	0	copy fasta	PPP6C	chr9	125141573	125194803
PPP6C_chr9_125141573_125194803	0/0	t0010	3183	5	4	1	0	0	0	copy fasta	PPP6C	chr9	125141573	125194803
PPP6C_chr9_125141573_125194803	0/0	t0011	3186	2	0	2	0	0	0	copy fasta	PPP6C	chr9	125141573	125194803
PPP6C_chr9_125141573_125194803	0/0	t0012	3183	2	0	0	2	0	0	copy fasta	PPP6C	chr9	125141573	125194803
PPP6C_chr9_125141573_125194803	0/0	t0013	3181	1	0	0	0	0	1	copy fasta	PPP6C	chr9	125141573	125194803
PPP6C_chr9_125141573_125194803	0/0	t0014	3186	1	1	0	0	0	0	copy fasta	PPP6C	chr9	125141573	125194803
PPP6C_chr9_125141573_125194803	0/0	t0015	3186	1	0	1	0	0	0	copy fasta	PPP6C	chr9	125141573	125194803
PPP6C_chr9_125141573_125194803	0/0	t0016	3183	1	0	0	1	0	0	copy fasta	PPP6C	chr9	125141573	125194803
PPP6C_chr9_125141573_125194803	0/0	t0017	3186	1	0	0	0	0	1	copy fasta	PPP6C	chr9	125141573	125194803
PPP6C_chr9_125141573_125194803	0/0	t0018	3182	1	0	0	1	0	0	copy fasta	PPP6C	chr9	125141573	125194803
PPP6C_chr9_125141573_125194803	0/0	t0019	3182	1	0	0	1	0	0	copy fasta	PPP6C	chr9	125141573	125194803
PPP6C_chr9_125141573_125194803	0/0	t0020	3182	1	1	0	0	0	0	copy fasta	PPP6C	chr9	125141573	125194803
PPP6C_chr9_125141573_125194803	0/0	t0021	3182	1	0	0	1	0	0	copy fasta	PPP6C	chr9	125141573	125194803
PPP6C_chr9_125141573_125194803	0/0	t0022	3186	1	0	0	0	0	1	copy fasta	PPP6C	chr9	125141573	125194803
PPP6R1_chr19_55224779_55264017	1/0	t0001	1339	268	55	54	110	13	35	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	t0002	1339	58	19	12	21	1	5	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	t0003	1340	15	1	2	8	0	4	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	t0004	1339	7	7	0	0	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	t0005	1340	5	2	0	3	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	t0006	1339	3	2	1	0	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	t0007	1339	3	2	1	0	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	t0008	1336	3	3	0	0	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	t0009	1339	2	0	2	0	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	t0010	1339	1	1	0	0	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	t0011	1312	1	1	0	0	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	t0012	1339	1	1	0	0	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	t0013	1339	1	1	0	0	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/1	t0014	1339	1	0	0	0	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	t0015	1339	1	1	0	0	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	t0016	1339	1	0	0	1	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	t0017	1339	1	0	0	1	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	t0018	1340	1	0	1	0	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	t0019	1339	1	1	0	0	0	0	copy fasta	PPP6R1	chr19	55224779	55264017