JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPP6R1_chr19_55224779_55264017	0/0	t0020	1339	1	0	0	0	0	1	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	t0021	1339	1	0	1	0	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	t0022	1339	1	0	0	0	0	1	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R1_chr19_55224779_55264017	0/0	t0023	1339	1	1	0	0	0	0	copy fasta	PPP6R1	chr19	55224779	55264017
PPP6R2_chr22_50338327_50450090	0/0	t0001	1215	58	4	12	34	2	6	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	t0002	1207	55	3	11	33	4	4	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	t0003	1215	32	6	12	3	5	6	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	t0004	1213	26	24	2	0	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/1	t0005	1213	18	4	3	7	0	3	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	t0006	1212	16	0	0	15	0	1	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	t0007	1215	16	1	3	10	0	2	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	t0008	1207	15	13	1	1	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	t0009	1213	13	5	2	5	1	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	t0010	1214	10	2	5	3	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	t0011	1212	9	9	0	0	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	t0012	1213	9	1	1	0	3	4	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	t0013	1214	7	1	1	0	1	4	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	t0014	1218	7	2	0	3	0	2	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	t0015	1213	5	5	0	0	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	t0016	1218	4	2	1	0	0	1	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	t0017	1218	4	0	1	3	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	t0018	1207	3	0	0	3	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	t0019	1220	3	1	2	0	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	t0020	1220	3	0	0	3	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	1/0	t0021	1215	3	0	0	2	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	t0022	1214	2	0	0	2	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	t0023	1212	2	2	0	0	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	t0024	1214	1	0	0	1	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	t0025	1209	1	0	0	0	0	1	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	t0026	1214	1	1	0	0	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	t0027	1214	1	1	0	0	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	t0028	1215	1	0	0	1	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	t0029	1221	1	0	0	0	0	1	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	t0030	1220	1	0	0	1	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	t0031	1214	1	1	0	0	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	t0032	1218	1	0	0	0	1	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	t0033	1207	1	0	0	1	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	t0034	1207	1	0	0	1	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	t0035	1207	1	0	0	1	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	t0036	1207	1	0	1	0	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	t0037	1212	1	0	0	0	1	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	t0038	1214	1	0	0	1	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	t0039	1215	1	0	0	1	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	t0040	1214	1	0	0	0	0	1	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	t0041	1219	1	0	0	1	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	t0042	1218	1	0	1	0	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R2_chr22_50338327_50450090	0/0	t0043	1214	1	0	1	0	0	0	copy fasta	PPP6R2	chr22	50338327	50450090
PPP6R3_chr11_68455752_68620334	1/1	t0001	2451	85	12	19	40	6	6	copy fasta	PPP6R3	chr11	68455752	68620334
PPP6R3_chr11_68455752_68620334	0/0	t0002	2442	56	5	8	40	0	3	copy fasta	PPP6R3	chr11	68455752	68620334
PPP6R3_chr11_68455752_68620334	0/0	t0003	2450	16	12	2	2	0	0	copy fasta	PPP6R3	chr11	68455752	68620334