JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPP6R3_chr11_68455752_68620334	0/0	t0004	2450	12	0	8	2	1	1	copy fasta	PPP6R3	chr11	68455752	68620334
PPP6R3_chr11_68455752_68620334	0/0	t0005	2443	10	3	4	0	3	0	copy fasta	PPP6R3	chr11	68455752	68620334
PPP6R3_chr11_68455752_68620334	0/0	t0006	2444	9	9	0	0	0	0	copy fasta	PPP6R3	chr11	68455752	68620334
PPP6R3_chr11_68455752_68620334	0/0	t0007	2444	9	9	0	0	0	0	copy fasta	PPP6R3	chr11	68455752	68620334
PPP6R3_chr11_68455752_68620334	0/0	t0008	2442	7	7	0	0	0	0	copy fasta	PPP6R3	chr11	68455752	68620334
PPP6R3_chr11_68455752_68620334	0/0	t0009	2451	6	5	0	0	0	1	copy fasta	PPP6R3	chr11	68455752	68620334
PPP6R3_chr11_68455752_68620334	0/0	t0010	2446	5	5	0	0	0	0	copy fasta	PPP6R3	chr11	68455752	68620334
PPP6R3_chr11_68455752_68620334	0/0	t0011	2451	4	0	0	4	0	0	copy fasta	PPP6R3	chr11	68455752	68620334
PPP6R3_chr11_68455752_68620334	0/0	t0012	2443	4	0	1	2	0	1	copy fasta	PPP6R3	chr11	68455752	68620334
PPP6R3_chr11_68455752_68620334	0/0	t0013	2446	4	4	0	0	0	0	copy fasta	PPP6R3	chr11	68455752	68620334
PPP6R3_chr11_68455752_68620334	0/0	t0014	2449	3	3	0	0	0	0	copy fasta	PPP6R3	chr11	68455752	68620334
PPP6R3_chr11_68455752_68620334	0/0	t0015	2446	3	3	0	0	0	0	copy fasta	PPP6R3	chr11	68455752	68620334
PPP6R3_chr11_68455752_68620334	0/0	t0016	2449	2	2	0	0	0	0	copy fasta	PPP6R3	chr11	68455752	68620334
PPP6R3_chr11_68455752_68620334	0/0	t0017	2451	2	1	1	0	0	0	copy fasta	PPP6R3	chr11	68455752	68620334
PPP6R3_chr11_68455752_68620334	0/0	t0018	2444	2	2	0	0	0	0	copy fasta	PPP6R3	chr11	68455752	68620334
PPP6R3_chr11_68455752_68620334	0/0	t0019	2443	2	2	0	0	0	0	copy fasta	PPP6R3	chr11	68455752	68620334
PPP6R3_chr11_68455752_68620334	0/0	t0020	2446	2	2	0	0	0	0	copy fasta	PPP6R3	chr11	68455752	68620334
PPP6R3_chr11_68455752_68620334	0/0	t0021	2449	1	1	0	0	0	0	copy fasta	PPP6R3	chr11	68455752	68620334
PPP6R3_chr11_68455752_68620334	0/0	t0022	2451	1	1	0	0	0	0	copy fasta	PPP6R3	chr11	68455752	68620334
PPP6R3_chr11_68455752_68620334	0/0	t0023	2451	1	1	0	0	0	0	copy fasta	PPP6R3	chr11	68455752	68620334
PPP6R3_chr11_68455752_68620334	0/0	t0024	2442	1	0	0	1	0	0	copy fasta	PPP6R3	chr11	68455752	68620334
PPP6R3_chr11_68455752_68620334	0/0	t0025	2444	1	1	0	0	0	0	copy fasta	PPP6R3	chr11	68455752	68620334
PPP6R3_chr11_68455752_68620334	0/0	t0026	2442	1	1	0	0	0	0	copy fasta	PPP6R3	chr11	68455752	68620334
PPP6R3_chr11_68455752_68620334	0/0	t0027	2451	1	0	0	1	0	0	copy fasta	PPP6R3	chr11	68455752	68620334
PPP6R3_chr11_68455752_68620334	0/0	t0028	2442	1	1	0	0	0	0	copy fasta	PPP6R3	chr11	68455752	68620334
PPP6R3_chr11_68455752_68620334	0/0	t0029	2446	1	0	1	0	0	0	copy fasta	PPP6R3	chr11	68455752	68620334
PPRC1_chr10_102128040_102155333	1/1	t0001	334	385	86	74	165	14	44	copy fasta	PPRC1	chr10	102128040	102155333
PPRC1_chr10_102128040_102155333	0/0	t0002	334	3	0	0	3	0	0	copy fasta	PPRC1	chr10	102128040	102155333
PPT1_chr1_40067712_40102252	0/1	t0001	1368	132	24	19	60	8	20	copy fasta	PPT1	chr1	40067712	40102252
PPT1_chr1_40067712_40102252	1/0	t0002	1364	117	27	26	49	6	8	copy fasta	PPT1	chr1	40067712	40102252
PPT1_chr1_40067712_40102252	0/0	t0003	1368	64	11	5	36	3	9	copy fasta	PPT1	chr1	40067712	40102252
PPT1_chr1_40067712_40102252	0/0	t0004	1364	35	0	1	27	1	6	copy fasta	PPT1	chr1	40067712	40102252
PPT1_chr1_40067712_40102252	0/0	t0005	1364	26	15	1	9	0	1	copy fasta	PPT1	chr1	40067712	40102252
PPT1_chr1_40067712_40102252	0/0	t0006	1361	9	9	0	0	0	0	copy fasta	PPT1	chr1	40067712	40102252
PPT1_chr1_40067712_40102252	0/0	t0007	1364	3	3	0	0	0	0	copy fasta	PPT1	chr1	40067712	40102252
PPT1_chr1_40067712_40102252	0/0	t0008	1364	2	0	2	0	0	0	copy fasta	PPT1	chr1	40067712	40102252
PPT1_chr1_40067712_40102252	0/0	t0009	1364	1	1	0	0	0	0	copy fasta	PPT1	chr1	40067712	40102252
PPT1_chr1_40067712_40102252	0/0	t0010	1368	1	0	0	0	0	1	copy fasta	PPT1	chr1	40067712	40102252
PPT1_chr1_40067712_40102252	0/0	t0011	1368	1	0	0	1	0	0	copy fasta	PPT1	chr1	40067712	40102252
PPT1_chr1_40067712_40102252	0/0	t0012	1368	1	1	0	0	0	0	copy fasta	PPT1	chr1	40067712	40102252
PPT1_chr1_40067712_40102252	0/0	t0013	1368	1	0	0	0	0	1	copy fasta	PPT1	chr1	40067712	40102252
PPT1_chr1_40067712_40102252	0/0	t0014	1364	1	0	0	1	0	0	copy fasta	PPT1	chr1	40067712	40102252
PPT1_chr1_40067712_40102252	0/0	t0015	1364	1	0	0	1	0	0	copy fasta	PPT1	chr1	40067712	40102252
PPT1_chr1_40067712_40102252	0/0	t0016	1364	1	1	0	0	0	0	copy fasta	PPT1	chr1	40067712	40102252
PPT2_chr6_32149141_32168675	0/1	t0001	998	404	81	73	193	14	42	copy fasta	PPT2	chr6	32149141	32168675
PPT2_chr6_32149141_32168675	0/0	t0002	998	15	6	7	0	2	0	copy fasta	PPT2	chr6	32149141	32168675
PPT2_chr6_32149141_32168675	0/0	t0003	998	2	2	0	0	0	0	copy fasta	PPT2	chr6	32149141	32168675
PPT2_chr6_32149141_32168675	0/0	t0004	998	1	0	0	1	0	0	copy fasta	PPT2	chr6	32149141	32168675
PPT2_chr6_32149141_32168675	0/0	t0005	998	1	1	0	0	0	0	copy fasta	PPT2	chr6	32149141	32168675
PPTC7_chr12_110528245_110588318	1/1	t0001	4080	180	49	36	62	9	22	copy fasta	PPTC7	chr12	110528245	110588318