JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PPTC7_chr12_110528245_110588318	0/0	t0002	4080	70	1	9	53	1	6	copy fasta	PPTC7	chr12	110528245	110588318
PPTC7_chr12_110528245_110588318	0/0	t0003	4079	16	8	2	2	1	3	copy fasta	PPTC7	chr12	110528245	110588318
PPTC7_chr12_110528245_110588318	0/0	t0004	4080	9	8	1	0	0	0	copy fasta	PPTC7	chr12	110528245	110588318
PPTC7_chr12_110528245_110588318	0/0	t0005	4080	7	4	2	0	0	1	copy fasta	PPTC7	chr12	110528245	110588318
PPTC7_chr12_110528245_110588318	0/0	t0006	4080	6	0	4	0	2	0	copy fasta	PPTC7	chr12	110528245	110588318
PPTC7_chr12_110528245_110588318	0/0	t0007	4081	5	0	4	0	1	0	copy fasta	PPTC7	chr12	110528245	110588318
PPTC7_chr12_110528245_110588318	0/0	t0008	4079	4	4	0	0	0	0	copy fasta	PPTC7	chr12	110528245	110588318
PPTC7_chr12_110528245_110588318	0/0	t0009	4074	4	3	1	0	0	0	copy fasta	PPTC7	chr12	110528245	110588318
PPTC7_chr12_110528245_110588318	0/0	t0010	4079	3	3	0	0	0	0	copy fasta	PPTC7	chr12	110528245	110588318
PPTC7_chr12_110528245_110588318	0/0	t0011	4080	2	2	0	0	0	0	copy fasta	PPTC7	chr12	110528245	110588318
PPTC7_chr12_110528245_110588318	0/0	t0012	4081	2	0	2	0	0	0	copy fasta	PPTC7	chr12	110528245	110588318
PPTC7_chr12_110528245_110588318	0/0	t0013	4080	2	2	0	0	0	0	copy fasta	PPTC7	chr12	110528245	110588318
PPTC7_chr12_110528245_110588318	0/0	t0014	4080	1	0	0	1	0	0	copy fasta	PPTC7	chr12	110528245	110588318
PPTC7_chr12_110528245_110588318	0/0	t0015	4080	1	0	0	0	0	1	copy fasta	PPTC7	chr12	110528245	110588318
PPTC7_chr12_110528245_110588318	0/0	t0016	4081	1	0	0	1	0	0	copy fasta	PPTC7	chr12	110528245	110588318
PPTC7_chr12_110528245_110588318	0/0	t0017	4080	1	0	0	1	0	0	copy fasta	PPTC7	chr12	110528245	110588318
PPTC7_chr12_110528245_110588318	0/0	t0018	4080	1	0	0	1	0	0	copy fasta	PPTC7	chr12	110528245	110588318
PPTC7_chr12_110528245_110588318	0/0	t0019	4080	1	0	1	0	0	0	copy fasta	PPTC7	chr12	110528245	110588318
PPTC7_chr12_110528245_110588318	0/0	t0020	4080	1	0	0	1	0	0	copy fasta	PPTC7	chr12	110528245	110588318
PPTC7_chr12_110528245_110588318	0/0	t0021	4082	1	1	0	0	0	0	copy fasta	PPTC7	chr12	110528245	110588318
PPTC7_chr12_110528245_110588318	0/0	t0022	4080	1	0	0	0	0	1	copy fasta	PPTC7	chr12	110528245	110588318
PPTC7_chr12_110528245_110588318	0/0	t0023	4079	1	0	1	0	0	0	copy fasta	PPTC7	chr12	110528245	110588318
PPTC7_chr12_110528245_110588318	0/0	t0024	4076	1	1	0	0	0	0	copy fasta	PPTC7	chr12	110528245	110588318
PPTC7_chr12_110528245_110588318	0/0	t0025	4080	1	0	0	0	0	1	copy fasta	PPTC7	chr12	110528245	110588318
PPTC7_chr12_110528245_110588318	0/0	t0026	4080	1	0	0	0	0	1	copy fasta	PPTC7	chr12	110528245	110588318
PPTC7_chr12_110528245_110588318	0/0	t0027	4080	1	1	0	0	0	0	copy fasta	PPTC7	chr12	110528245	110588318
PPTC7_chr12_110528245_110588318	0/0	t0028	4080	1	0	1	0	0	0	copy fasta	PPTC7	chr12	110528245	110588318
PPTC7_chr12_110528245_110588318	0/0	t0029	4080	1	0	0	1	0	0	copy fasta	PPTC7	chr12	110528245	110588318
PPTC7_chr12_110528245_110588318	0/0	t0030	4079	1	1	0	0	0	0	copy fasta	PPTC7	chr12	110528245	110588318
PPTC7_chr12_110528245_110588318	0/0	t0031	4080	1	0	0	1	0	0	copy fasta	PPTC7	chr12	110528245	110588318
PPWD1_chr5_65558296_65592549	1/1	t0001	169	371	96	74	143	18	38	copy fasta	PPWD1	chr5	65558296	65592549
PPWD1_chr5_65558296_65592549	0/0	t0002	167	11	0	0	11	0	0	copy fasta	PPWD1	chr5	65558296	65592549
PPWD1_chr5_65558296_65592549	0/0	t0003	169	2	2	0	0	0	0	copy fasta	PPWD1	chr5	65558296	65592549
PPY_chr17_43935804_43947476	1/1	t0001	181	378	96	72	156	16	36	copy fasta	PPY	chr17	43935804	43947476
PQBP1_chrX_48892930_48908143	1/1	t0001	231	304	77	57	127	13	28	copy fasta	PQBP1	chrX	48892930	48908143
PQBP1_chrX_48892930_48908143	0/0	t0002	230	1	0	0	1	0	0	copy fasta	PQBP1	chrX	48892930	48908143
PQBP1_chrX_48892930_48908143	0/0	t0003	232	1	0	0	1	0	0	copy fasta	PQBP1	chrX	48892930	48908143
PQBP1_chrX_48892930_48908143	0/0	t0004	227	1	0	1	0	0	0	copy fasta	PQBP1	chrX	48892930	48908143
PRAC1_chr17_48716719_48727518	1/1	t0001	209	231	32	44	113	13	27	copy fasta	PRAC1	chr17	48716719	48727518
PRAC1_chr17_48716719_48727518	0/0	t0002	209	193	58	28	83	5	19	copy fasta	PRAC1	chr17	48716719	48727518
PRAC2_chr17_48718185_48729758	1/1	t0001	288	323	68	58	146	12	37	copy fasta	PRAC2	chr17	48718185	48729758
PRAC2_chr17_48718185_48729758	0/0	t0002	288	104	18	17	56	4	9	copy fasta	PRAC2	chr17	48718185	48729758
PRAC2_chr17_48718185_48729758	0/0	t0003	289	6	3	1	2	0	0	copy fasta	PRAC2	chr17	48718185	48729758
PRAC2_chr17_48718185_48729758	0/0	t0004	288	1	1	0	0	0	0	copy fasta	PRAC2	chr17	48718185	48729758
PRADC1_chr2_73223010_73238239	0/0	t0001	519	205	77	35	71	9	13	copy fasta	PRADC1	chr2	73223010	73238239
PRADC1_chr2_73223010_73238239	1/1	t0002	524	163	13	36	92	5	15	copy fasta	PRADC1	chr2	73223010	73238239
PRADC1_chr2_73223010_73238239	0/0	t0003	519	9	8	1	0	0	0	copy fasta	PRADC1	chr2	73223010	73238239
PRADC1_chr2_73223010_73238239	0/0	t0004	524	1	0	0	1	0	0	copy fasta	PRADC1	chr2	73223010	73238239
PRAF2_chrX_49066161_49079002	0/1	t0001	726	227	45	47	98	9	27	copy fasta	PRAF2	chrX	49066161	49079002
PRAF2_chrX_49066161_49079002	0/0	t0002	724	18	17	1	0	0	0	copy fasta	PRAF2	chrX	49066161	49079002