Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATP5F1A_chr18_46075248_46103296	0/0	t0092	4089	1	0	0	1	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0093	4096	1	1	0	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0094	4096	1	0	1	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0095	4089	1	0	0	1	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0096	4090	1	0	0	1	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0097	4089	1	1	0	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0098	4092	1	0	0	1	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0099	4095	1	0	0	0	0	1	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0100	4099	1	0	0	0	1	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0101	4095	1	0	0	0	1	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0102	4093	1	1	0	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0103	4094	1	1	0	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0104	4095	1	1	0	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0105	4096	1	0	0	0	0	1	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0106	4095	1	1	0	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0107	4096	1	0	1	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0108	4092	1	0	0	0	0	1	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0109	4096	1	1	0	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0110	4096	1	0	0	0	0	1	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0111	4096	1	1	0	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0112	4095	1	0	1	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0113	4099	1	0	0	1	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0114	4099	1	0	1	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0115	4096	1	0	0	0	0	1	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0116	4096	1	0	0	0	0	1	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0117	4095	1	1	0	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0118	4096	1	1	0	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0119	4086	1	0	0	1	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0120	4097	1	0	0	0	0	1	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0121	4088	1	0	0	1	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0122	4096	1	0	1	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0123	4097	1	0	0	1	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0124	4097	1	1	0	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0125	4096	1	1	0	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0126	4097	1	1	0	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0127	4100	1	0	1	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0128	4088	1	0	0	1	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0129	4088	1	0	0	1	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0130	4090	1	0	1	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0131	4091	1	0	0	0	0	1	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0132	4091	1	0	0	1	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0133	4091	1	0	0	1	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0134	4100	1	0	0	0	0	1	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	t0135	4103	1	0	0	0	0	1	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1B_chr12_56633175_56650984	1/1	t0001	170	381	84	68	178	15	34	copy fasta	ATP5F1B	chr12	56633175	56650984
ATP5F1B_chr12_56633175_56650984	0/0	t0002	159	9	8	0	0	1	0	copy fasta	ATP5F1B	chr12	56633175	56650984
ATP5F1C_chr10_7783177_7812801	1/0	t0001	205	286	55	50	139	14	27	copy fasta	ATP5F1C	chr10	7783177	7812801
ATP5F1C_chr10_7783177_7812801	0/1	t0002	205	132	27	24	61	2	17	copy fasta	ATP5F1C	chr10	7783177	7812801
ATP5F1C_chr10_7783177_7812801	0/0	t0003	205	2	2	0	0	0	0	copy fasta	ATP5F1C	chr10	7783177	7812801
ATP5F1D_chr19_1236751_1249825	1/1	t0001	489	351	84	71	141	16	37	copy fasta	ATP5F1D	chr19	1236751	1249825