JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRAF2_chrX_49066161_49079002	1/0	t0003	724	14	11	2	0	0	0	copy fasta	PRAF2	chrX	49066161	49079002
PRAF2_chrX_49066161_49079002	0/0	t0004	726	3	0	0	0	2	1	copy fasta	PRAF2	chrX	49066161	49079002
PRAF2_chrX_49066161_49079002	0/0	t0005	726	2	2	0	0	0	0	copy fasta	PRAF2	chrX	49066161	49079002
PRAF2_chrX_49066161_49079002	0/0	t0006	725	1	0	0	1	0	0	copy fasta	PRAF2	chrX	49066161	49079002
PRAF2_chrX_49066161_49079002	0/0	t0007	727	1	0	0	1	0	0	copy fasta	PRAF2	chrX	49066161	49079002
PRAF2_chrX_49066161_49079002	0/0	t0008	727	1	0	0	1	0	0	copy fasta	PRAF2	chrX	49066161	49079002
PRAF2_chrX_49066161_49079002	0/0	t0009	726	1	0	0	1	0	0	copy fasta	PRAF2	chrX	49066161	49079002
PRAF2_chrX_49066161_49079002	0/0	t0010	727	1	0	0	1	0	0	copy fasta	PRAF2	chrX	49066161	49079002
PRAF2_chrX_49066161_49079002	0/0	t0011	724	1	1	0	0	0	0	copy fasta	PRAF2	chrX	49066161	49079002
PRAG1_chr8_8312736_8391439	1/1	t0001	625	186	46	39	70	7	22	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	t0002	625	141	35	29	52	7	18	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	t0003	625	2	2	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	t0004	625	2	2	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	t0005	625	1	1	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	t0006	625	1	1	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	t0007	625	1	1	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	t0008	625	1	1	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAG1_chr8_8312736_8391439	0/0	t0009	625	1	1	0	0	0	0	copy fasta	PRAG1	chr8	8312736	8391439
PRAM1_chr19_8485056_8507640	1/1	t0001	183	290	32	62	141	10	43	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	t0002	183	123	61	14	39	4	5	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	t0003	183	5	5	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	t0004	183	2	2	0	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	t0005	183	1	0	1	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAM1_chr19_8485056_8507640	0/0	t0006	183	1	0	1	0	0	0	copy fasta	PRAM1	chr19	8485056	8507640
PRAMEF10_chr1_12887896_12903270	0/0	t0001	101	279	61	44	134	11	29	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	1/0	t0002	101	92	4	25	46	3	13	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	t0003	101	5	0	5	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF10_chr1_12887896_12903270	0/0	t0004	101	1	1	0	0	0	0	copy fasta	PRAMEF10	chr1	12887896	12903270
PRAMEF11_chr1_12819605_12836410	1/0	t0001	409	247	18	40	144	10	34	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/1	t0002	409	146	62	30	37	4	12	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	t0003	409	3	3	0	0	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	t0004	409	2	0	0	2	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	t0005	409	1	0	0	0	1	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	t0006	409	1	0	0	1	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	t0007	409	1	1	0	0	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	t0008	409	1	0	0	0	1	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	t0009	409	1	1	0	0	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF11_chr1_12819605_12836410	0/0	t0010	409	1	1	0	0	0	0	copy fasta	PRAMEF11	chr1	12819605	12836410
PRAMEF12_chr1_12768738_12782906	1/0	t0001	1438	260	35	59	120	9	36	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/1	t0002	1438	72	8	10	41	2	10	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/0	t0003	1438	18	13	3	0	1	1	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/0	t0004	1439	17	16	1	0	0	0	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/0	t0005	1438	8	7	1	0	0	0	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/0	t0006	1438	7	7	0	0	0	0	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/0	t0007	1438	3	1	2	0	0	0	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/0	t0008	1438	2	2	0	0	0	0	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/0	t0009	1438	2	0	2	0	0	0	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/0	t0010	1438	1	1	0	0	0	0	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/0	t0011	1438	1	0	0	1	0	0	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/0	t0012	1438	1	0	0	1	0	0	copy fasta	PRAMEF12	chr1	12768738	12782906