JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRAMEF12_chr1_12768738_12782906	0/0	t0013	1438	1	0	0	1	0	0	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/0	t0014	1438	1	1	0	0	0	0	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/0	t0015	1438	1	0	0	1	0	0	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/0	t0016	1415	1	0	0	0	0	1	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/0	t0017	1438	1	1	0	0	0	0	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/0	t0018	1438	1	1	0	0	0	0	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/0	t0019	1438	1	0	0	1	0	0	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/0	t0020	1438	1	0	0	1	0	0	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/0	t0021	1439	1	1	0	0	0	0	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF12_chr1_12768738_12782906	0/0	t0022	1439	1	0	0	1	0	0	copy fasta	PRAMEF12	chr1	12768738	12782906
PRAMEF13_chr1_13191188_13206409	0/0	t0001	739	22	11	2	3	0	6	copy fasta	PRAMEF13	chr1	13191188	13206409
PRAMEF13_chr1_13191188_13206409	1/0	t0002	739	11	0	2	4	2	2	copy fasta	PRAMEF13	chr1	13191188	13206409
PRAMEF13_chr1_13191188_13206409	0/0	t0003	739	7	4	0	1	0	2	copy fasta	PRAMEF13	chr1	13191188	13206409
PRAMEF13_chr1_13191188_13206409	0/0	t0004	739	3	3	0	0	0	0	copy fasta	PRAMEF13	chr1	13191188	13206409
PRAMEF13_chr1_13191188_13206409	0/0	t0005	739	2	2	0	0	0	0	copy fasta	PRAMEF13	chr1	13191188	13206409
PRAMEF13_chr1_13191188_13206409	0/0	t0006	739	2	2	0	0	0	0	copy fasta	PRAMEF13	chr1	13191188	13206409
PRAMEF13_chr1_13191188_13206409	0/0	t0007	739	2	2	0	0	0	0	copy fasta	PRAMEF13	chr1	13191188	13206409
PRAMEF13_chr1_13191188_13206409	0/0	t0008	739	2	1	0	0	0	1	copy fasta	PRAMEF13	chr1	13191188	13206409
PRAMEF13_chr1_13191188_13206409	0/0	t0009	739	1	0	0	0	0	1	copy fasta	PRAMEF13	chr1	13191188	13206409
PRAMEF13_chr1_13191188_13206409	0/0	t0010	739	1	1	0	0	0	0	copy fasta	PRAMEF13	chr1	13191188	13206409
PRAMEF14_chr1_13336892_13352134	1/0	t0001	740	193	55	43	73	7	14	copy fasta	PRAMEF14	chr1	13336892	13352134
PRAMEF14_chr1_13336892_13352134	0/1	t0002	740	27	5	12	2	3	4	copy fasta	PRAMEF14	chr1	13336892	13352134
PRAMEF14_chr1_13336892_13352134	0/0	t0003	740	15	2	1	2	1	9	copy fasta	PRAMEF14	chr1	13336892	13352134
PRAMEF14_chr1_13336892_13352134	0/0	t0004	740	5	3	2	0	0	0	copy fasta	PRAMEF14	chr1	13336892	13352134
PRAMEF14_chr1_13336892_13352134	0/0	t0005	741	4	4	0	0	0	0	copy fasta	PRAMEF14	chr1	13336892	13352134
PRAMEF14_chr1_13336892_13352134	0/0	t0006	740	2	2	0	0	0	0	copy fasta	PRAMEF14	chr1	13336892	13352134
PRAMEF14_chr1_13336892_13352134	0/0	t0007	740	1	0	0	1	0	0	copy fasta	PRAMEF14	chr1	13336892	13352134
PRAMEF14_chr1_13336892_13352134	0/0	t0008	740	1	0	1	0	0	0	copy fasta	PRAMEF14	chr1	13336892	13352134
PRAMEF14_chr1_13336892_13352134	0/0	t0009	740	1	0	0	0	0	1	copy fasta	PRAMEF14	chr1	13336892	13352134
PRAMEF14_chr1_13336892_13352134	0/0	t0010	740	1	1	0	0	0	0	copy fasta	PRAMEF14	chr1	13336892	13352134
PRAMEF14_chr1_13336892_13352134	0/0	t0011	740	1	1	0	0	0	0	copy fasta	PRAMEF14	chr1	13336892	13352134
PRAMEF14_chr1_13336892_13352134	0/0	t0012	740	1	1	0	0	0	0	copy fasta	PRAMEF14	chr1	13336892	13352134
PRAMEF14_chr1_13336892_13352134	0/0	t0013	740	1	0	0	1	0	0	copy fasta	PRAMEF14	chr1	13336892	13352134
PRAMEF14_chr1_13336892_13352134	0/0	t0014	740	1	0	0	1	0	0	copy fasta	PRAMEF14	chr1	13336892	13352134
PRAMEF14_chr1_13336892_13352134	0/0	t0015	740	1	0	1	0	0	0	copy fasta	PRAMEF14	chr1	13336892	13352134
PRAMEF14_chr1_13336892_13352134	0/0	t0016	740	1	0	0	0	1	0	copy fasta	PRAMEF14	chr1	13336892	13352134
PRAMEF15_chr1_13310581_13327598	1/1	t0001	429	287	68	64	111	12	30	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF15_chr1_13310581_13327598	0/0	t0002	429	7	7	0	0	0	0	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF15_chr1_13310581_13327598	0/0	t0003	429	5	4	0	1	0	0	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF15_chr1_13310581_13327598	0/0	t0004	429	1	1	0	0	0	0	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF15_chr1_13310581_13327598	0/0	t0005	429	1	0	0	0	0	1	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF15_chr1_13310581_13327598	0/0	t0006	429	1	0	0	0	0	1	copy fasta	PRAMEF15	chr1	13310581	13327598
PRAMEF17_chr1_13384632_13397629	1/0	t0001	154	262	59	47	125	6	24	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/1	t0002	154	126	21	20	57	11	16	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	t0003	156	36	17	7	8	1	3	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF17_chr1_13384632_13397629	0/0	t0004	155	6	1	0	4	0	1	copy fasta	PRAMEF17	chr1	13384632	13397629
PRAMEF18_chr1_13217695_13231154	0/1	t0001	686	191	36	39	87	8	20	copy fasta	PRAMEF18	chr1	13217695	13231154
PRAMEF18_chr1_13217695_13231154	0/0	t0002	686	55	23	3	22	0	7	copy fasta	PRAMEF18	chr1	13217695	13231154
PRAMEF18_chr1_13217695_13231154	0/0	t0003	686	17	0	2	14	0	1	copy fasta	PRAMEF18	chr1	13217695	13231154
PRAMEF18_chr1_13217695_13231154	0/0	t0004	686	1	1	0	0	0	0	copy fasta	PRAMEF18	chr1	13217695	13231154