JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRAMEF4_chr1_12874212_12891201	0/0	t0000	0	1	0	0	1	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/1	t0001	404	171	36	28	83	7	16	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	1/0	t0002	404	74	4	20	33	5	11	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	t0003	404	30	15	5	5	1	4	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	t0004	404	24	5	7	9	1	2	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	t0005	72	5	5	0	0	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	t0006	404	5	0	0	5	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	t0007	13621	2	0	0	2	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	t0008	13621	2	0	0	2	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	t0009	404	1	1	0	0	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	t0010	404	1	1	0	0	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	t0011	404	1	0	0	0	1	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	t0012	404	1	0	0	1	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	t0013	404	1	1	0	0	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	t0014	13621	1	0	0	1	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	t0015	26840	1	0	0	1	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	t0016	13621	1	0	0	1	0	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	t0017	13621	1	0	0	0	1	0	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF4_chr1_12874212_12891201	0/0	t0018	404	1	0	0	0	0	1	copy fasta	PRAMEF4	chr1	12874212	12891201
PRAMEF5_chr1_13249198_13268435	0/0	t0001	425	44	8	7	21	3	5	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	t0002	425	37	2	12	19	1	3	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	t0003	425	19	0	2	15	0	2	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	t0004	425	16	1	4	9	1	1	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	t0005	425	11	1	0	10	0	0	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	t0006	425	5	0	1	3	0	1	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	t0007	425	3	0	0	0	1	2	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	t0008	425	2	2	0	0	0	0	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	t0009	425	2	0	0	2	0	0	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	t0010	425	2	0	0	2	0	0	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF5_chr1_13249198_13268435	0/0	t0011	425	1	0	0	1	0	0	copy fasta	PRAMEF5	chr1	13249198	13268435
PRAMEF6_chr1_12933472_12952580	0/0	t0001	290	64	6	16	37	1	4	copy fasta	PRAMEF6	chr1	12933472	12952580
PRAMEF6_chr1_12933472_12952580	0/0	t0002	290	7	0	3	3	0	1	copy fasta	PRAMEF6	chr1	12933472	12952580
PRAMEF6_chr1_12933472_12952580	0/0	t0003	290	6	4	2	0	0	0	copy fasta	PRAMEF6	chr1	12933472	12952580
PRAMEF6_chr1_12933472_12952580	0/0	t0004	290	6	0	2	2	1	1	copy fasta	PRAMEF6	chr1	12933472	12952580
PRAMEF6_chr1_12933472_12952580	0/0	t0005	290	4	0	0	4	0	0	copy fasta	PRAMEF6	chr1	12933472	12952580
PRAMEF6_chr1_12933472_12952580	0/0	t0006	290	1	0	1	0	0	0	copy fasta	PRAMEF6	chr1	12933472	12952580
PRAMEF6_chr1_12933472_12952580	0/0	t0007	290	1	0	0	1	0	0	copy fasta	PRAMEF6	chr1	12933472	12952580
PRAMEF6_chr1_12933472_12952580	0/0	t0008	290	1	0	0	1	0	0	copy fasta	PRAMEF6	chr1	12933472	12952580
PRAMEF7_chr1_12911610_12925751	0/0	t0001	442	254	48	64	96	10	36	copy fasta	PRAMEF7	chr1	12911610	12925751
PRAMEF8_chr1_13276304_13290137	0/0	t0001	134	331	70	60	155	12	34	copy fasta	PRAMEF8	chr1	13276304	13290137
PRAMEF8_chr1_13276304_13290137	0/0	t0002	134	1	0	0	1	0	0	copy fasta	PRAMEF8	chr1	13276304	13290137
PRAMEF9_chr1_13166848_13184459	0/0	t0001	1023	78	6	26	34	4	8	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	t0002	1022	26	0	0	25	0	1	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	1/0	t0003	1029	23	0	5	17	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/1	t0004	1028	21	3	4	10	1	2	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	t0005	1023	10	2	1	2	1	4	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	t0006	1029	7	3	0	4	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	t0007	1022	6	0	4	1	0	1	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	t0008	1023	5	2	1	2	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	t0009	1023	3	3	0	0	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459