JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRAMEF9_chr1_13166848_13184459	0/0	t0010	1029	2	1	1	0	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	t0011	1023	2	0	1	0	0	1	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	t0012	1023	2	0	2	0	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	t0013	1028	2	0	0	1	0	1	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	t0014	1029	2	0	0	1	0	1	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	t0015	1023	2	0	2	0	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	t0016	1029	1	1	0	0	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	t0017	1023	1	0	1	0	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	t0018	1023	1	1	0	0	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	t0019	1023	1	0	1	0	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	t0020	1023	1	0	0	1	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	t0021	1023	1	1	0	0	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	t0022	1024	1	0	0	1	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	t0023	1028	1	0	0	0	0	1	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	t0024	1024	1	1	0	0	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	t0025	1024	1	0	0	1	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	t0026	1028	1	1	0	0	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	t0027	1022	1	1	0	0	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAMEF9_chr1_13166848_13184459	0/0	t0028	1023	1	0	1	0	0	0	copy fasta	PRAMEF9	chr1	13166848	13184459
PRAME_chr22_22542701_22564265	0/1	t0001	775	165	29	23	73	10	29	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	t0002	775	105	27	12	58	1	7	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	t0003	775	81	17	12	38	3	11	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	t0004	775	16	1	11	0	2	2	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	t0005	775	12	1	3	8	0	0	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	t0006	775	5	4	1	0	0	0	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	t0007	775	3	0	0	3	0	0	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	t0008	772	3	2	0	0	0	1	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	t0009	775	2	0	2	0	0	0	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	t0010	775	2	2	0	0	0	0	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	t0011	775	1	1	0	0	0	0	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	t0012	775	1	0	0	1	0	0	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	t0013	775	1	1	0	0	0	0	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	t0014	775	1	0	0	1	0	0	copy fasta	PRAME	chr22	22542701	22564265
PRAME_chr22_22542701_22564265	0/0	t0015	775	1	1	0	0	0	0	copy fasta	PRAME	chr22	22542701	22564265
PRAP1_chr10_133342373_133357683	1/1	t0001	289	383	93	71	165	16	36	copy fasta	PRAP1	chr10	133342373	133357683
PRAP1_chr10_133342373_133357683	0/0	t0002	289	3	3	0	0	0	0	copy fasta	PRAP1	chr10	133342373	133357683
PRAP1_chr10_133342373_133357683	0/0	t0003	289	1	0	1	0	0	0	copy fasta	PRAP1	chr10	133342373	133357683
PRAP1_chr10_133342373_133357683	0/0	t0004	275	1	0	0	1	0	0	copy fasta	PRAP1	chr10	133342373	133357683
PRB2_chr12_11386540_11400567	0/1	t0001	182	215	18	49	114	8	25	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	1/0	t0002	181	184	41	21	99	2	20	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	t0003	182	7	5	2	0	0	0	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	t0004	181	3	0	0	3	0	0	copy fasta	PRB2	chr12	11386540	11400567
PRB2_chr12_11386540_11400567	0/0	t0005	181	1	0	0	0	0	1	copy fasta	PRB2	chr12	11386540	11400567
PRB3_chr12_11260914_11274707	0/1	t0001	172	261	39	64	116	10	31	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	t0002	172	113	32	4	68	0	9	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	t0003	172	68	23	6	28	3	8	copy fasta	PRB3	chr12	11260914	11274707
PRB3_chr12_11260914_11274707	0/0	t0004	172	1	0	0	0	1	0	copy fasta	PRB3	chr12	11260914	11274707
PRB4_chr12_11302077_11315436	0/1	t0001	180	332	52	63	169	14	33	copy fasta	PRB4	chr12	11302077	11315436
PRB4_chr12_11302077_11315436	0/0	t0002	180	109	36	15	40	2	16	copy fasta	PRB4	chr12	11302077	11315436
PRB4_chr12_11302077_11315436	0/0	t0003	180	3	0	0	3	0	0	copy fasta	PRB4	chr12	11302077	11315436