JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRB4_chr12_11302077_11315436	0/0	t0004	180	2	1	1	0	0	0	copy fasta	PRB4	chr12	11302077	11315436
PRB4_chr12_11302077_11315436	0/0	t0005	180	2	0	0	2	0	0	copy fasta	PRB4	chr12	11302077	11315436
PRB4_chr12_11302077_11315436	0/0	t0006	180	1	1	0	0	0	0	copy fasta	PRB4	chr12	11302077	11315436
PRB4_chr12_11302077_11315436	0/0	t0007	180	1	0	0	0	0	1	copy fasta	PRB4	chr12	11302077	11315436
PRB4_chr12_11302077_11315436	0/0	t0008	180	1	0	1	0	0	0	copy fasta	PRB4	chr12	11302077	11315436
PRC1_chr15_90961040_90999535	0/0	t0001	1210	239	48	35	139	0	17	copy fasta	PRC1	chr15	90961040	90999535
PRC1_chr15_90961040_90999535	1/1	t0002	1210	56	5	25	0	14	10	copy fasta	PRC1	chr15	90961040	90999535
PRC1_chr15_90961040_90999535	0/0	t0003	1210	18	6	4	5	0	3	copy fasta	PRC1	chr15	90961040	90999535
PRC1_chr15_90961040_90999535	0/0	t0004	1210	12	0	1	0	2	9	copy fasta	PRC1	chr15	90961040	90999535
PRC1_chr15_90961040_90999535	0/0	t0005	1210	11	8	2	1	0	0	copy fasta	PRC1	chr15	90961040	90999535
PRC1_chr15_90961040_90999535	0/0	t0006	1210	10	10	0	0	0	0	copy fasta	PRC1	chr15	90961040	90999535
PRC1_chr15_90961040_90999535	0/0	t0007	1210	6	3	0	3	0	0	copy fasta	PRC1	chr15	90961040	90999535
PRC1_chr15_90961040_90999535	0/0	t0008	1210	3	0	0	3	0	0	copy fasta	PRC1	chr15	90961040	90999535
PRC1_chr15_90961040_90999535	0/0	t0009	1210	3	3	0	0	0	0	copy fasta	PRC1	chr15	90961040	90999535
PRC1_chr15_90961040_90999535	0/0	t0010	1210	2	2	0	0	0	0	copy fasta	PRC1	chr15	90961040	90999535
PRC1_chr15_90961040_90999535	0/0	t0011	1210	2	2	0	0	0	0	copy fasta	PRC1	chr15	90961040	90999535
PRC1_chr15_90961040_90999535	0/0	t0012	1210	1	1	0	0	0	0	copy fasta	PRC1	chr15	90961040	90999535
PRC1_chr15_90961040_90999535	0/0	t0013	1210	1	1	0	0	0	0	copy fasta	PRC1	chr15	90961040	90999535
PRC1_chr15_90961040_90999535	0/0	t0014	1210	1	1	0	0	0	0	copy fasta	PRC1	chr15	90961040	90999535
PRC1_chr15_90961040_90999535	0/0	t0015	1210	1	0	0	1	0	0	copy fasta	PRC1	chr15	90961040	90999535
PRC1_chr15_90961040_90999535	0/0	t0016	1210	1	1	0	0	0	0	copy fasta	PRC1	chr15	90961040	90999535
PRC1_chr15_90961040_90999535	0/0	t0017	1210	1	1	0	0	0	0	copy fasta	PRC1	chr15	90961040	90999535
PRC1_chr15_90961040_90999535	0/0	t0018	1210	1	0	0	0	0	1	copy fasta	PRC1	chr15	90961040	90999535
PRC1_chr15_90961040_90999535	0/0	t0019	1210	1	0	0	0	0	1	copy fasta	PRC1	chr15	90961040	90999535
PRC1_chr15_90961040_90999535	0/0	t0020	1210	1	0	0	1	0	0	copy fasta	PRC1	chr15	90961040	90999535
PRC1_chr15_90961040_90999535	0/0	t0021	1210	1	1	0	0	0	0	copy fasta	PRC1	chr15	90961040	90999535
PRC1_chr15_90961040_90999535	0/0	t0022	1210	1	1	0	0	0	0	copy fasta	PRC1	chr15	90961040	90999535
PRC1_chr15_90961040_90999535	0/0	t0023	1210	1	0	0	1	0	0	copy fasta	PRC1	chr15	90961040	90999535
PRC1_chr15_90961040_90999535	0/0	t0024	1210	1	0	0	0	0	1	copy fasta	PRC1	chr15	90961040	90999535
PRC1_chr15_90961040_90999535	0/0	t0025	1210	1	0	1	0	0	0	copy fasta	PRC1	chr15	90961040	90999535
PRCC_chr1_156762535_156805815	1/1	t0001	593	339	93	74	119	10	41	copy fasta	PRCC	chr1	156762535	156805815
PRCC_chr1_156762535_156805815	0/0	t0002	592	4	0	3	0	0	1	copy fasta	PRCC	chr1	156762535	156805815
PRCC_chr1_156762535_156805815	0/0	t0003	593	2	2	0	0	0	0	copy fasta	PRCC	chr1	156762535	156805815
PRCC_chr1_156762535_156805815	0/0	t0004	593	1	0	1	0	0	0	copy fasta	PRCC	chr1	156762535	156805815
PRCC_chr1_156762535_156805815	0/0	t0005	593	1	0	0	0	0	1	copy fasta	PRCC	chr1	156762535	156805815
PRCC_chr1_156762535_156805815	0/0	t0006	593	1	1	0	0	0	0	copy fasta	PRCC	chr1	156762535	156805815
PRCC_chr1_156762535_156805815	0/0	t0007	593	1	0	0	1	0	0	copy fasta	PRCC	chr1	156762535	156805815
PRCC_chr1_156762535_156805815	0/0	t0008	593	1	0	0	0	0	1	copy fasta	PRCC	chr1	156762535	156805815
PRCD_chr17_76535044_76550376	0/1	t0001	1825	207	10	39	131	4	22	copy fasta	PRCD	chr17	76535044	76550376
PRCD_chr17_76535044_76550376	0/0	t0002	1825	72	21	14	25	5	7	copy fasta	PRCD	chr17	76535044	76550376
PRCD_chr17_76535044_76550376	1/0	t0003	1825	61	11	9	32	5	3	copy fasta	PRCD	chr17	76535044	76550376
PRCD_chr17_76535044_76550376	0/0	t0004	1825	28	27	1	0	0	0	copy fasta	PRCD	chr17	76535044	76550376
PRCD_chr17_76535044_76550376	0/0	t0005	1825	20	1	6	2	1	10	copy fasta	PRCD	chr17	76535044	76550376
PRCD_chr17_76535044_76550376	0/0	t0006	1825	11	11	0	0	0	0	copy fasta	PRCD	chr17	76535044	76550376
PRCD_chr17_76535044_76550376	0/0	t0007	1825	9	8	1	0	0	0	copy fasta	PRCD	chr17	76535044	76550376
PRCD_chr17_76535044_76550376	0/0	t0008	1825	9	0	0	8	0	1	copy fasta	PRCD	chr17	76535044	76550376
PRCD_chr17_76535044_76550376	0/0	t0009	1825	4	1	1	2	0	0	copy fasta	PRCD	chr17	76535044	76550376
PRCD_chr17_76535044_76550376	0/0	t0010	1825	3	2	0	1	0	0	copy fasta	PRCD	chr17	76535044	76550376
PRCD_chr17_76535044_76550376	0/0	t0011	1825	2	0	2	0	0	0	copy fasta	PRCD	chr17	76535044	76550376
PRCD_chr17_76535044_76550376	0/0	t0012	1825	2	0	0	0	0	2	copy fasta	PRCD	chr17	76535044	76550376