JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRCD_chr17_76535044_76550376	0/0	t0013	1825	2	0	0	2	0	0	copy fasta	PRCD	chr17	76535044	76550376
PRCD_chr17_76535044_76550376	0/0	t0014	1825	2	0	0	1	1	0	copy fasta	PRCD	chr17	76535044	76550376
PRCD_chr17_76535044_76550376	0/0	t0015	1825	1	0	0	1	0	0	copy fasta	PRCD	chr17	76535044	76550376
PRCD_chr17_76535044_76550376	0/0	t0016	1825	1	1	0	0	0	0	copy fasta	PRCD	chr17	76535044	76550376
PRCD_chr17_76535044_76550376	0/0	t0017	1825	1	0	0	1	0	0	copy fasta	PRCD	chr17	76535044	76550376
PRCD_chr17_76535044_76550376	0/0	t0018	1825	1	1	0	0	0	0	copy fasta	PRCD	chr17	76535044	76550376
PRCD_chr17_76535044_76550376	0/0	t0019	1825	1	0	1	0	0	0	copy fasta	PRCD	chr17	76535044	76550376
PRCD_chr17_76535044_76550376	0/0	t0020	1825	1	1	0	0	0	0	copy fasta	PRCD	chr17	76535044	76550376
PRCD_chr17_76535044_76550376	0/0	t0021	1825	1	0	0	0	0	1	copy fasta	PRCD	chr17	76535044	76550376
PRCD_chr17_76535044_76550376	0/0	t0022	1825	1	1	0	0	0	0	copy fasta	PRCD	chr17	76535044	76550376
PRCD_chr17_76535044_76550376	0/0	t0023	1825	1	0	0	0	0	1	copy fasta	PRCD	chr17	76535044	76550376
PRCD_chr17_76535044_76550376	0/0	t0024	1825	1	0	0	0	0	1	copy fasta	PRCD	chr17	76535044	76550376
PRCP_chr11_82817936_82905430	1/1	t0001	1999	90	17	32	20	6	13	copy fasta	PRCP	chr11	82817936	82905430
PRCP_chr11_82817936_82905430	0/0	t0002	1996	72	6	15	36	2	13	copy fasta	PRCP	chr11	82817936	82905430
PRCP_chr11_82817936_82905430	0/0	t0003	1997	64	3	4	49	0	8	copy fasta	PRCP	chr11	82817936	82905430
PRCP_chr11_82817936_82905430	0/0	t0004	1997	16	16	0	0	0	0	copy fasta	PRCP	chr11	82817936	82905430
PRCP_chr11_82817936_82905430	0/0	t0005	1998	11	8	2	0	0	1	copy fasta	PRCP	chr11	82817936	82905430
PRCP_chr11_82817936_82905430	0/0	t0006	1997	10	8	2	0	0	0	copy fasta	PRCP	chr11	82817936	82905430
PRCP_chr11_82817936_82905430	0/0	t0007	1997	10	9	1	0	0	0	copy fasta	PRCP	chr11	82817936	82905430
PRCP_chr11_82817936_82905430	0/0	t0008	1999	9	0	0	9	0	0	copy fasta	PRCP	chr11	82817936	82905430
PRCP_chr11_82817936_82905430	0/0	t0009	1996	6	0	6	0	0	0	copy fasta	PRCP	chr11	82817936	82905430
PRCP_chr11_82817936_82905430	0/0	t0010	1997	5	5	0	0	0	0	copy fasta	PRCP	chr11	82817936	82905430
PRCP_chr11_82817936_82905430	0/0	t0011	1998	5	4	1	0	0	0	copy fasta	PRCP	chr11	82817936	82905430
PRCP_chr11_82817936_82905430	0/0	t0012	1999	3	3	0	0	0	0	copy fasta	PRCP	chr11	82817936	82905430
PRCP_chr11_82817936_82905430	0/0	t0013	1997	3	3	0	0	0	0	copy fasta	PRCP	chr11	82817936	82905430
PRCP_chr11_82817936_82905430	0/0	t0014	1996	3	0	0	0	0	3	copy fasta	PRCP	chr11	82817936	82905430
PRCP_chr11_82817936_82905430	0/0	t0015	1998	2	2	0	0	0	0	copy fasta	PRCP	chr11	82817936	82905430
PRCP_chr11_82817936_82905430	0/0	t0016	1998	2	2	0	0	0	0	copy fasta	PRCP	chr11	82817936	82905430
PRCP_chr11_82817936_82905430	0/0	t0017	1997	2	0	0	2	0	0	copy fasta	PRCP	chr11	82817936	82905430
PRCP_chr11_82817936_82905430	0/0	t0018	1999	2	0	0	2	0	0	copy fasta	PRCP	chr11	82817936	82905430
PRCP_chr11_82817936_82905430	0/0	t0019	1999	1	0	1	0	0	0	copy fasta	PRCP	chr11	82817936	82905430
PRCP_chr11_82817936_82905430	0/0	t0020	1999	1	1	0	0	0	0	copy fasta	PRCP	chr11	82817936	82905430
PRCP_chr11_82817936_82905430	0/0	t0021	1999	1	1	0	0	0	0	copy fasta	PRCP	chr11	82817936	82905430
PRCP_chr11_82817936_82905430	0/0	t0022	1999	1	1	0	0	0	0	copy fasta	PRCP	chr11	82817936	82905430
PRCP_chr11_82817936_82905430	0/0	t0023	1999	1	1	0	0	0	0	copy fasta	PRCP	chr11	82817936	82905430
PRDM10_chr11_129894711_130007835	0/1	t0001	2838	98	8	14	73	0	2	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	t0002	2835	80	11	13	47	1	8	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	t0003	2833	22	0	5	13	1	3	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	t0004	2838	19	14	5	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	t0005	2841	19	5	8	4	0	2	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	t0006	2832	14	13	1	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	t0007	2835	12	1	2	6	0	3	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	t0008	2838	9	9	0	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	t0009	2829	6	6	0	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	t0010	2841	5	5	0	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	t0011	2832	4	4	0	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	t0012	2843	4	4	0	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	t0013	2844	3	3	0	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	t0014	2841	3	1	1	1	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	t0015	2832	3	3	0	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835