JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRDM10_chr11_129894711_130007835	0/0	t0016	2838	3	0	2	1	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	t0017	2833	3	0	0	3	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	t0018	2832	2	0	0	0	1	1	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	t0019	2829	2	0	1	0	1	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	t0020	2838	2	2	0	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	t0021	2838	1	0	0	0	0	1	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	t0022	2832	1	1	0	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	t0023	2835	1	1	0	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	t0024	2838	1	0	0	0	0	1	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	t0025	2835	1	0	0	1	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	t0026	2836	1	0	0	0	0	1	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	t0027	2844	1	1	0	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	t0028	2835	1	1	0	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	t0029	2832	1	1	0	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	1/0	t0030	2835	1	0	0	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	t0031	2841	1	1	0	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	t0032	2847	1	1	0	0	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM10_chr11_129894711_130007835	0/0	t0033	2835	1	0	0	1	0	0	copy fasta	PRDM10	chr11	129894711	130007835
PRDM11_chr11_45141639_45240109	1/0	t0001	7196	38	0	8	29	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0002	7173	32	2	7	18	1	4	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0003	7200	27	0	7	17	0	3	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0004	7193	25	13	9	0	0	3	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0005	7177	19	5	5	4	2	3	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0006	7196	15	9	2	2	0	2	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0007	7173	12	0	0	12	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0008	7172	7	0	2	0	3	2	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0009	7201	5	3	0	2	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0010	7194	4	4	0	0	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0011	7191	4	3	1	0	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0012	7193	4	3	0	0	0	1	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0013	7200	4	0	4	0	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0014	7202	4	0	1	3	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0015	7195	3	3	0	0	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0016	7193	3	3	0	0	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0017	7173	3	0	0	3	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0018	7173	3	0	0	3	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0019	7173	3	3	0	0	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0020	7191	3	3	0	0	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/1	t0021	7177	3	0	0	0	0	2	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0022	7196	3	0	0	3	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0023	7196	3	0	0	0	0	3	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0024	7196	3	0	0	3	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0025	7201	3	0	0	3	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0026	7193	3	2	1	0	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0027	7175	2	0	0	2	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0028	7174	2	2	0	0	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0029	7174	2	2	0	0	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0030	7188	2	0	1	1	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0031	7208	2	0	2	0	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0032	7191	2	2	0	0	0	0	copy fasta	PRDM11	chr11	45141639	45240109