JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRDM11_chr11_45141639_45240109	0/0	t0033	7200	2	0	0	2	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0034	7214	1	1	0	0	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0035	7173	1	1	0	0	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0036	7193	1	1	0	0	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0037	7193	1	1	0	0	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0038	7193	1	1	0	0	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0039	7182	1	1	0	0	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0040	7198	1	1	0	0	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0041	7194	1	0	0	1	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0042	7214	1	0	0	0	0	1	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0043	7173	1	0	0	1	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0044	7173	1	1	0	0	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0045	7173	1	0	0	0	0	1	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0046	7173	1	1	0	0	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0047	7195	1	1	0	0	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0048	7173	1	0	1	0	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0049	7174	1	1	0	0	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0050	7175	1	1	0	0	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0051	7195	1	1	0	0	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0052	7195	1	0	0	0	1	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0053	7177	1	1	0	0	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0054	7177	1	0	0	0	0	1	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0055	7177	1	0	1	0	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0056	7176	1	1	0	0	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0057	7196	1	0	1	0	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0058	7196	1	0	0	0	0	1	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0059	7196	1	0	0	1	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0060	7178	1	0	0	0	0	1	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0061	7196	1	0	0	1	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0062	7200	1	1	0	0	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0063	7198	1	0	0	1	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0064	7200	1	0	1	0	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0065	7210	1	1	0	0	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0066	7200	1	0	0	1	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0067	7200	1	0	0	1	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0068	7200	1	0	1	0	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0069	7200	1	0	1	0	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0070	7190	1	0	0	0	0	1	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0071	7193	1	0	0	1	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0072	7196	1	1	0	0	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0073	7217	1	0	0	1	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0074	7173	1	0	0	1	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0075	7172	1	0	0	1	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0076	7173	1	0	0	1	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0077	7173	1	0	0	0	0	1	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0078	7173	1	0	0	1	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0079	7196	1	0	0	1	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0080	7198	1	0	0	1	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0081	7196	1	0	0	0	1	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0082	7196	1	0	0	1	0	0	copy fasta	PRDM11	chr11	45141639	45240109